View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21102_low_4 (Length: 421)
Name: NF21102_low_4
Description: NF21102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21102_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 43142757 - 43143138
Alignment:
| Q |
18 |
gtagctggtattatcaacaacttgttcacaatcaattggtatggtattttactgacgtatattttgatagtctttttaaatataaatataaattactatt |
117 |
Q |
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| T |
43142757 |
gtagctggtat-atcaacaacttgttcacaatcaattggtatggtattttactgacgtatattttgatagtctttttaaa------tataaattactatt |
43142849 |
T |
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| Q |
118 |
ttattgacaattccttacatttatttaatgtcaatttaaatctatgttgaaaatggtgatgatctttgttgtttcattgactagtggtcagatataattt |
217 |
Q |
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| T |
43142850 |
ttattgacaattccttacatttatttaatgtcaatttaaatctatgttgaaaatggtgatgatctttgttgtttcattgactagtggtcagatataattt |
43142949 |
T |
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| Q |
218 |
catttcctaccataacacttgcaatctaaatagaaatttgaagcacctatcttaacttgttgataacttgatatcgaaatcgagtcattcatattcttgc |
317 |
Q |
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| T |
43142950 |
catttcctaccataacacttgcaatctaaatagaaatttgaagcacctatcttaacttgttgataacttgatatcgaaatcgagtcattcatattcttgc |
43143049 |
T |
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| Q |
318 |
cttgctaaatgtgtttaaattacgctagtatttattggcaccttggcaggttggggtggagaaaatgcacaaagacacaaagtatgtat |
406 |
Q |
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| T |
43143050 |
cttgctaaatgtgtttaaactacgctagtatttattggcaccttggcaggttggggtggagaaaatgcacaaagacacaaagtatgtat |
43143138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 43155045 - 43155101
Alignment:
| Q |
350 |
tattggcaccttggcaggttggggtggagaaaatgcacaaagacacaaagtatgtat |
406 |
Q |
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| T |
43155045 |
tattggcatcgtggcaggttggggtggagaaaatgcacaaagacacaaagtatgtat |
43155101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 43154822 - 43154955
Alignment:
| Q |
172 |
ggtgatgatctttgttgtttcattgactagtggtca-------gatataatttcatttcctaccataacacttgcaatctaaatagaaatttg-aagcac |
263 |
Q |
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| T |
43154822 |
ggtgatgatcttagttgtttcattgattggtggtcactgtcaggacataatctcatttcctagcataacacttgccagttaaatagaagtgtgaaagcac |
43154921 |
T |
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| Q |
264 |
ctatcttaacttgttgataacttgatatcgaaat |
297 |
Q |
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| T |
43154922 |
ctgtattaacttgttgataatttgacatcaaaat |
43154955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 43154743 - 43154785
Alignment:
| Q |
42 |
ttcacaatcaattggtatggtattttactgacgtatattttgata |
86 |
Q |
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| T |
43154743 |
ttcacaatcaattggtatgttattttactgac--atattttgata |
43154785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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