View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21102_low_5 (Length: 379)
Name: NF21102_low_5
Description: NF21102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21102_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 35 - 361
Target Start/End: Complemental strand, 33568877 - 33568550
Alignment:
| Q |
35 |
taccatctcttagcactaataacatttnnnnnnntattacaattttgtaacaaccatgttattggcacaagcaaatttttccgagtactaatctccttca |
134 |
Q |
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| T |
33568877 |
taccatctcttagcactaataacatttaaaaaaatattataattttgtaacaaccatgttattggcgcaagcaaatttttccgagtactaatctccttca |
33568778 |
T |
|
| Q |
135 |
atttggtcagcaacatcaatttttccaataaaaaa-gtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaa |
233 |
Q |
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| T |
33568777 |
atttggtcagcaacatcaatttttccaataaaaaaagtatgcaacagtaatttgaactgtaacataatacacatgtctctggatcaaaagcagactctaa |
33568678 |
T |
|
| Q |
234 |
taccatgttaagcttttatgttggaccgaattcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacgatcgcgat |
333 |
Q |
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| T |
33568677 |
taccatgttaagcttttatgttggaccgaattcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacaatcgcgat |
33568578 |
T |
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| Q |
334 |
tctttgtaatatcacagaaccacgacat |
361 |
Q |
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| T |
33568577 |
tctttctaatatcaaagaaccgcgacat |
33568550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 352
Target Start/End: Complemental strand, 19025835 - 19025646
Alignment:
| Q |
164 |
aaaaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaataccatg-ttaagcttttatgttggaccga |
262 |
Q |
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| T |
19025835 |
aaaaaggtatgcaactgtaatttgaactgtaacataatacacatgtctttggatcaaaaccagactccgacaccatcattaagcttttatgttggaccga |
19025736 |
T |
|
| Q |
263 |
attcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacgatcgcgattctttgtaatatcacagaa |
352 |
Q |
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| T |
19025735 |
attcatcttcataaaaggaattaaagatgtcactcttcataaactataatcagaacacatatgattacgattctttgtaatatcaaagaa |
19025646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 164 - 352
Target Start/End: Original strand, 21495215 - 21495404
Alignment:
| Q |
164 |
aaaaaagtatgcaacaataatttgaactgtaagataatacccatgtctctggatcaaaagtagactctaataccat-gttaagcttttatgttggaccga |
262 |
Q |
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||||| ||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| | |||| | ||||| ||||||||||| |||||||||| |
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| T |
21495215 |
aaaaaggtatgcaactgtaatttgaactgtaacataatacacatgtctttggatcaaaaccaaactccgacaccatctttaagcttttacgttggaccga |
21495314 |
T |
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| Q |
263 |
attcatccttataaaaggaattaaagatgtcactctttataaactataattagaccacatacgatcgcgattctttgtaatatcacagaa |
352 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| |||||||||||| |||||| |||| |
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| T |
21495315 |
attcatcctcataaaaggaattaaagatgtcactcttcataaactataatcagaacacatatgattgcgattctttgtgatatcaaagaa |
21495404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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