View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_high_13 (Length: 299)
Name: NF21103_high_13
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 52936062 - 52935795
Alignment:
| Q |
16 |
atactattatagcgaaaattcaaaatcaaaagtctgacacttataaaattaataatgatatatggagcattgcaaatttgaaatcgttttttaaaattgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52936062 |
atactattatagcgaaaattcaaaatcaaaagtcggacacttaaaaaattaataatgatatatggagtattgcaaatttgaaatcgttttttaaaattgc |
52935963 |
T |
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| Q |
116 |
tttgcttaaaaaaccaaattataagtgatagttcacataaacatatcaaacatgtggagtaggaaaaagtaattagaagaaaaattgattcacaaaagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52935962 |
tttgcttaaaaaaccaaattataagtgatagttcacataaacatatcaaacatgtggaataggaaaaagtaattagaagaaaaattgattcacaaaagag |
52935863 |
T |
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| Q |
216 |
tggttgtggcctgttctcatgagcaaatgaaagtgacaaacaatccctatattaaaatctcccaaacc |
283 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
52935862 |
tggttgtggcatgttctcatgagcaaatgaaagtgacaaacaattcctatattaaaacctcccaaacc |
52935795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 52943697 - 52943430
Alignment:
| Q |
16 |
atactattatagcgaaaattcaaaatcaaaagtctgacacttataaaattaataatgatatatggagcattgcaaatttgaaatcgttttttaaaattgc |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52943697 |
atactattatagcgaaaattcaaaatcaaaagtcggacacttaaaaaattaataatgatatatggagtattgcaaatttgaaatcgttttttaaaattgc |
52943598 |
T |
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| Q |
116 |
tttgcttaaaaaaccaaattataagtgatagttcacataaacatatcaaacatgtggagtaggaaaaagtaattagaagaaaaattgattcacaaaagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52943597 |
tttgcttaaaaaaccaaattataagtgatagttcacataaacatatcaaacatgtggaataggaaaaagtaattagaagaaaaattgattcacaaaagag |
52943498 |
T |
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| Q |
216 |
tggttgtggcctgttctcatgagcaaatgaaagtgacaaacaatccctatattaaaatctcccaaacc |
283 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
52943497 |
tggttgtggcttgttctcatgagcaaatgaaagtgacaaacaattcctatattaaaacctcccaaacc |
52943430 |
T |
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