View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_high_20 (Length: 204)
Name: NF21103_high_20
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_high_20 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0517 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 15565720 - 15565517
Alignment:
| Q |
1 |
aacagaaggaggtggaggaagaccagttttggcacataactcttcaatagtccatttacgcaaatttgcactatcaagcatggtatagtagttcatggtt |
100 |
Q |
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| T |
15565720 |
aacaaaaggaggtggaggaagaccagttttggcacataactcttcaatcgtccatttacgcaaatttgcactatcaagcatggtatagtagttcatggtt |
15565621 |
T |
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| Q |
101 |
tgaattgtttgcaaagaggggccttgtaaccaaaactcgggtggtaagttttcagctatagtgacaggaggtggaacaagatcatagggaattttgggta |
200 |
Q |
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| T |
15565620 |
tgaattgttagcaaagaggggccttgtaaccaaaactcgggtggtaagttttcagctatagtgacaggaggtggaacaagatcatagggaattttgggta |
15565521 |
T |
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| Q |
201 |
acgc |
204 |
Q |
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|||| |
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| T |
15565520 |
acgc |
15565517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 28252783 - 28252668
Alignment:
| Q |
1 |
aacagaaggaggtggaggaagaccagttttggcacataactcttcaatagtccatttacgcaaatttgcactatcaagcatggtatagtagttcatggtt |
100 |
Q |
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|||| ||||||||||| ||||||| ||||||||||||||||||| | | ||||||| ||||||||| ||||| ||||||| |||||||||||||||| |
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| T |
28252783 |
aacaaaaggaggtggatcaagaccaattttggcacataactcttctacaatccattttcgcaaatttcaactatgaagcatgagatagtagttcatggtt |
28252684 |
T |
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| Q |
101 |
tgaattgtttgcaaag |
116 |
Q |
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| T |
28252683 |
tgaattgtttgcaaag |
28252668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 37401715 - 37401830
Alignment:
| Q |
1 |
aacagaaggaggtggaggaagaccagttttggcacataactcttcaatagtccatttacgcaaatttgcactatcaagcatggtatagtagttcatggtt |
100 |
Q |
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|||| ||||||||||| || |||||||||| ||||||||||||| | | ||||||| | ||||||| |||||||||||||| |||||||||||||| | |
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| T |
37401715 |
aacaaaaggaggtggatcaataccagttttgacacataactcttctacaatccattttcacaaatttacactatcaagcatgagatagtagttcatggat |
37401814 |
T |
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| Q |
101 |
tgaattgtttgcaaag |
116 |
Q |
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| T |
37401815 |
tgaattgtttgcaaag |
37401830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 6361 - 6246
Alignment:
| Q |
1 |
aacagaaggaggtggaggaagaccagttttggcacataactcttcaatagtccatttacgcaaatttgcactatcaagcatggtatagtagttcatggtt |
100 |
Q |
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|||| ||||||||||| || |||||||||| ||||||||||||| | | ||||||| | ||||||| |||||||||||||| |||||||||||||| | |
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| T |
6361 |
aacaaaaggaggtggatcaataccagttttgacacataactcttctacaatccattttcacaaatttacactatcaagcatgagatagtagttcatggat |
6262 |
T |
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| Q |
101 |
tgaattgtttgcaaag |
116 |
Q |
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|||||||||||||||| |
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| T |
6261 |
tgaattgtttgcaaag |
6246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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