View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_high_3 (Length: 528)
Name: NF21103_high_3
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 25861234 - 25860730
Alignment:
| Q |
9 |
gagaagaaattatattagataaatttctggagttggggaaattcttataactctgaaacaatttagatcaaaaatagaaaaccacgatgagtatatca-- |
106 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
25861234 |
gagaacaaattatattagataaatttctagagttggggaaattcttataactctgaaacaatttcgatcaaaaatagaaaaccacgatgagtagatcata |
25861135 |
T |
|
| Q |
107 |
ccctgattctgacatatccacaaaaataccaaacataagctaagtatgtcgtacctccaaccttccaatagaggaagaaacattgataatttttggcgag |
206 |
Q |
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| T |
25861134 |
ccctgattctgacatatccacaaaaataccaaacataagctaagta-gtcgtacctccaaccttccaatagaggaagaaacattgacaatttttggcgag |
25861036 |
T |
|
| Q |
207 |
cttgaacactgaagaaggggaatcagaattctagttaattctttggttccaaagtagtttgttcttaagccattctcaactaattcatagttttcaaaat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
25861035 |
cttgaacactgaagaaggggaatcagaattctagttaattctttggttccaaaatagtttgttcttaggcctttctcaactaattcatagttttcaaaat |
25860936 |
T |
|
| Q |
307 |
atattttagtccagtcaactttgctaggatctacctgcacaaccaaacaagaaatcaattcaaagagaatttcattaaatttgattttcaatatatttga |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25860935 |
atattttagtccagtcaactttgctaggatctacctgcacaaccgaacaagaaatcaattcaaagagaatttcattaaatttgattttcaatatatttga |
25860836 |
T |
|
| Q |
407 |
aatttaattttaaataaaacattctaagtttttgttgtaaaaatagattcaaagagtgga--taattaagtgattatcataccacaacaccaagagcagc |
504 |
Q |
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||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25860835 |
aatttaatttt-aataaaacattctaagcttttgttgtaaacacagattcaaagagtggatgtaattaagtgattatcataccacaacaccaagagcagc |
25860737 |
T |
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| Q |
505 |
caaagct |
511 |
Q |
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||||||| |
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| T |
25860736 |
caaagct |
25860730 |
T |
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