View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_12 (Length: 302)
Name: NF21103_low_12
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 13373223 - 13373495
Alignment:
| Q |
20 |
tgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggtatcagagtagcc |
119 |
Q |
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| T |
13373223 |
tgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcacgaagtgttcgtgggcaaccatggtatcagagtagcc |
13373322 |
T |
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| Q |
120 |
tccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcgagatcatcaccacaactttgacatgagtgg |
219 |
Q |
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| T |
13373323 |
tccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcgagatcatcaccacaactttgacatgagtgg |
13373422 |
T |
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| Q |
220 |
caggatccaaccatgcaccctacacctaccttgtctccaactttgaactttgtcaccatgcttccaacctttg |
292 |
Q |
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| T |
13373423 |
caggatccaaccatgcaccctacacctaccttgtctccaactttgaactttgtcaccatgcttccaacctttg |
13373495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 13379019 - 13379288
Alignment:
| Q |
20 |
tgatccccgcacaaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggtatcagagtagcc |
119 |
Q |
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| T |
13379019 |
tgatcccagcacaaaggagaggagcggcagcatcaagtgataaggcatcgggaatacggacaataaagtgttcgtcgacaaccatggtgtcagagtagcc |
13379118 |
T |
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| Q |
120 |
tccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcgagatcatcaccacaactttgacatgagtgg |
219 |
Q |
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| T |
13379119 |
tccatatgtgatagtgccatcaacattcttggaactgtatgtctgaatcatctttgagcaataattttcgagatcctcgccacaactttgacatgaatgg |
13379218 |
T |
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| Q |
220 |
caggatccaaccatgcaccctacacctaccttgtctccaactttgaactttgtcaccatgcttccaacct |
289 |
Q |
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| T |
13379219 |
caggatccaaccatgcaccccacaccaaccctatctccaactttgatgtttttcaccttgcttcccacct |
13379288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 13454146 - 13454249
Alignment:
| Q |
181 |
taattctcgagatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaactttgtcaccatgc |
280 |
Q |
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| T |
13454146 |
taattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactttgc |
13454245 |
T |
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| Q |
281 |
ttcc |
284 |
Q |
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|||| |
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| T |
13454246 |
ttcc |
13454249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 13419492 - 13419591
Alignment:
| Q |
31 |
caaagaagaggagcagcggcatcaagtggtaaggcatcaggaatacggatcaagaagtgttcgtcggcaaccatggtatcagagtagcctccatatgtga |
130 |
Q |
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| T |
13419492 |
caaagaagaggaccggcagcatcaagaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtga |
13419591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 266
Target Start/End: Complemental strand, 28430579 - 28430403
Alignment:
| Q |
90 |
ttcgtcggcaaccatggtatcagagtagcctccatatgtgattgttccatcaatattcttggcgccatatgtgaggatcatctttgagcaataattctcg |
189 |
Q |
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|||||||| ||||| || || |||||||||||||||||||| || ||||||| |||||||| || |||||||| |||| |||| || ||||| ||| |
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| T |
28430579 |
ttcgtcggtgaccattgtgtcggagtagcctccatatgtgatggtgccatcaagattcttggaaccgtatgtgagaatcacttttggacagtaattttcg |
28430480 |
T |
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| Q |
190 |
agatcatcaccacaactttgacatgagtggcaggatccaaccatgcaccctacacctaccttgtctccaactttgaa |
266 |
Q |
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||| || ||| |||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
28430479 |
agactttcgttgcaattttggcatgagtggcaggattgaaccatgcacccaacacctaccttgtctccaactttgaa |
28430403 |
T |
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