View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21103_low_15 (Length: 257)
Name: NF21103_low_15
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_15 |
 | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
| [»] scaffold0524 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28033539 - 28033757
Alignment:
| Q |
18 |
gcaagatgggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
28033539 |
gcaagatgggtattggtgttgtggtgagagataatgaagatgttgtcgttgatgctagttgctgacaaatcttttcattaaaagtttcagaagttggaga |
28033638 |
T |
|
| Q |
118 |
agctttagctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttctatgttgttttgacgtaatgct |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
28033639 |
agctttagctatgcgaaacgatttaaaatttgcaaaagac--atgttttctgaatcttatatcagaatcagatgcttctatattgtcgtgacgtaatgct |
28033736 |
T |
|
| Q |
218 |
catcaacaatctcccacctat |
238 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
28033737 |
catcaacaatctctcacctat |
28033757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 7103781 - 7103997
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||| | |||||| |||| |||| | ||| |
|
|
| T |
7103781 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcgttgatgctagttattggcaagtcttttcattaccaaattcagaggttgcagaatcctta |
7103880 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatc |
221 |
Q |
| |
|
|||||||| || ||| ||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||| |||| ||||| ||| |||||||| | |
|
|
| T |
7103881 |
gctatgcggaagggtttggaatttgcaaatgacatgtcttttctgaatcttatagcagaatcagatgcttctaatgtggttttagcgttaaatgctcacc |
7103980 |
T |
|
| Q |
222 |
aacaatctcccacctat |
238 |
Q |
| |
|
||||| |||||| |||| |
|
|
| T |
7103981 |
aacaacctcccaactat |
7103997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 196
Target Start/End: Complemental strand, 40756665 - 40756497
Alignment:
| Q |
28 |
tattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagct |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||| | || || | ||||||||| || |||||| |||| |||||||||||| |
|
|
| T |
40756665 |
tattggtgttgtggtgagagataatgaaggtgttgtcgttggtgctagttcctgacaagtattttcattaccagattcagaggttgcggaagctttagct |
40756566 |
T |
|
| Q |
128 |
atgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct |
196 |
Q |
| |
|
||| || || ||||| |||||||||| |||||||| ||||||||| || |||||||||||||| |
|
|
| T |
40756565 |
atgtagaagggattgtaatttgcaaaagacatgtcttttctgaatcttatagcaaaatcagatgcttct |
40756497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 7109094 - 7109266
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| | || ||||||||| | || |||||| |||| | ||| || |
|
|
| T |
7109094 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcgttggtgctagttcttggcaagtcttttcatcaccagattcagaggttgcaaaagacata |
7109193 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
||||||| || ||| |||||| ||| ||||| |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
7109194 |
gctatgcagaagggtttgaaatttgtaaatgacatgtcttttttgaatcttatagcagaatcagatgcttcta |
7109266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 44527386 - 44527601
Alignment:
| Q |
26 |
ggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttag |
125 |
Q |
| |
|
||||||| ||| |||| ||||||||||||| ||||||| ||| |||||| ||| || |||| ||||| ||| || ||| | |||| | ||||| ||| |
|
|
| T |
44527386 |
ggtattgttgtcgtgggaagagataatgaagatgttgtcgttgctgctagctgctgacaaatattttctttaccagactcataggttgtaaaagctctag |
44527485 |
T |
|
| Q |
126 |
ctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatca |
222 |
Q |
| |
|
|||||| || | |||||||||| | |||||||| |||||| | ||||||||| |||||| | | |||||| |||| || ||||| | ||||||||||| |
|
|
| T |
44527486 |
ttatgcggaagagtttaaaatttgcgaaagacatgtcttttatgaatcttataacagaattacacgcttctaatgtggtattgacattgaatgctcatca |
44527585 |
T |
|
| Q |
223 |
acaatctcccacctat |
238 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
44527586 |
acaatctttcacctat |
44527601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 2059070 - 2059122
Alignment:
| Q |
26 |
ggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttg |
78 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||| ||| ||||||||| |
|
|
| T |
2059070 |
ggtattggtgttgttgtgagagataatgaaggtgtggtcgttggtgctagttg |
2059122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11423037 - 11423001
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgtt |
61 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11423037 |
gggtatcggtgttgtggtaagagataatgaaggtgtt |
11423001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 9492844 - 9492633
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| | || || ||||||||||| || ||||| |||| |||||||||| |
|
|
| T |
9492844 |
gggtattggtgttgtggtgagagataatgaaagtgttgtccttgatgctagttcctgacaagtcttttcattaccagattcaggggttgtagaagcttta |
9492745 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatc |
221 |
Q |
| |
|
||||||||||| ||| |||||| ||||||| | | |||||| ||||||||| ||||||||||||||||| |||||||||| ||| |||||||||| |
|
|
| T |
9492744 |
gctatgcgaaagggtttgaaatttgtaaaagacgtgtgttttctgaatcttatagcagaatcagatgcttctaatgttgttttagcgttgaatgctcatc |
9492645 |
T |
|
| Q |
222 |
aacaatctccca |
233 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9492644 |
aacaatctccca |
9492633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 19237540 - 19237712
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || | || ||||||||| || |||| | |||| |||||||||| |
|
|
| T |
19237540 |
gggtattggtgttgcggtgagagataatgaaggtgttgtcgttggtgctagttcatgacatatattttcattaccagattcaaaggttgcagaagcttta |
19237639 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
||||||||||| ||| ||||| ||| |||||| |||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
19237640 |
gctatgcgaaagggtttggaatttgcaacagacatgtcttttctaaatcttatagcagaatcagctgcttcta |
19237712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 19310724 - 19310896
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||| |||||||| || | || ||||||||| || |||| | |||| |||||||||| |
|
|
| T |
19310724 |
gggtattggtgttgcggtgagagataatgaaggtgttgtcgttggtgctagttcatgacatatattttcattaccagattcaaaggttgcagaagcttta |
19310823 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
||||||||||| ||| ||||| ||| |||||| |||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
19310824 |
gctatgcgaaagggtttggaatttgcaacagacatgtcttttctaaatcttatagcagaatcagctgcttcta |
19310896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 8970068 - 8970284
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| || ||||| | || ||||||||||| | || | | |||| |||||||||| |
|
|
| T |
8970068 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcgttggtgttagtttctagcaagtcttttcattaccggatttaaaggttgcagaagcttta |
8970167 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatc |
221 |
Q |
| |
|
||||| || || | ||| ||||| |||||||||| |||||||| ||||||||| |||||||| |||||||| |||| ||||| ||| |||||||| | |
|
|
| T |
8970168 |
gctatacggaagagtttggaatttgcaaaagacatgtcttttctgaatcttatagcagaatcaaatgcttctgatgtggttttagcgttgaatgctcacc |
8970267 |
T |
|
| Q |
222 |
aacaatctcccacctat |
238 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
8970268 |
aacaatctcccaactat |
8970284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 16435984 - 16435768
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||| |||||||| | || | |||||||||| | || ||| |||| ||||| |||| |
|
|
| T |
16435984 |
gggtagtggtgttgtggtgagagataatgaaggtgttgtcgttggtgctagttcctgacatggcttttcattaccaaattaagaggttgcagaagtttta |
16435885 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatc |
221 |
Q |
| |
|
|||||| |||| ||| |||||| |||||||||| |||||||| ||||||||| |||||||||||| |||| |||| ||||| ||| |||||||| |
|
|
| T |
16435884 |
gctatgggaaagggtttgaaatttgcaaaagacatgtcttttctgaatcttatagcagaatcagatgtttctaatgtggttttagcgttgaatgctcact |
16435785 |
T |
|
| Q |
222 |
aacaatctcccacctat |
238 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
16435784 |
aacaatctcccaactat |
16435768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 38311881 - 38312056
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
||||||||||||||| || |||||| |||||||| |||| ||| ||||||||| | || ||||||||||| || |||| | || |||||||||||| |
|
|
| T |
38311881 |
gggtattggtgttgttgtaagagattatgaaggtattgtggttgctgctagttgttgtcaagtcttttcattaccagattcaaaggtaggagaagcttta |
38311980 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagaca---tatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
|||||||| || || |||||| ||||||||| | |||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
38311981 |
gctatgcggaaggggttgaaatttgcaaaagacatgttttctttttttaatcttatagcagaatcagatgcttcta |
38312056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 2538060 - 2537839
Alignment:
| Q |
24 |
tgggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaa----aagtttcagaagttggagaag |
119 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| |||||||| ||| || ||||||| | ||||||||||||||| | || ||| |||| ||||| |
|
|
| T |
2538060 |
tgggtattgatgttgcggtgagagataatgacggtgttgtagttggtgttagttgctggcaaatcttttcattaattgccatatttagatgttgcagaag |
2537961 |
T |
|
| Q |
120 |
ctttagctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacg--taatgc |
216 |
Q |
| |
|
|||| |||||| ||| ||| |||||| |||||||| |||||||| |||||| || |||||||||||||||| |||| || ||| || ||||| |
|
|
| T |
2537960 |
ttttatctatgcaaaagggtttgaaatttgtgaaagacatgtcttttctgaatcttttagtagaatcagatgcttctaatgtggtcttggcgctgaatgc |
2537861 |
T |
|
| Q |
217 |
tcatcaacaatctcccacctat |
238 |
Q |
| |
|
|||||||| |||| |||||||| |
|
|
| T |
2537860 |
tcatcaacgatcttccacctat |
2537839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 43542193 - 43542398
Alignment:
| Q |
36 |
ttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgcgaaa |
135 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| |||||||| | |||||||||||||| || |||||| |||| |||||||||||||||||| || |
|
|
| T |
43542193 |
ttgttgtgagagataatgaaggtgttgtcgttggtgctagtttttggcaaatcttttcattaccagattcagaggttgcagaagctttagctatgcggaa |
43542292 |
T |
|
| Q |
136 |
caatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaatctccc |
232 |
Q |
| |
|
||| | ||| | |||||||| |||||||| ||||||||| ||||||||||||||||| |||| ||||| ||| |||||||| |||||||||||| |
|
|
| T |
43542293 |
gggtttggagtttgcgaaagacatgtcttttctgaatcttatagcagaatcagatgcttctaatgtggttttagcgttgaatgctcaccaacaatctccc |
43542392 |
T |
|
| Q |
233 |
acctat |
238 |
Q |
| |
|
| |||| |
|
|
| T |
43542393 |
aactat |
43542398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 31438537 - 31438708
Alignment:
| Q |
26 |
ggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttag |
125 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||| ||| |||||||||| || || | ||||||||| | |||| | || | ||||||||| |
|
|
| T |
31438537 |
ggtattggtgttgcagtgagagataacgaaggtgttgtcgttgctgctagttgctgacaagtattttcattactaaattcataggtaccaaaagctttag |
31438636 |
T |
|
| Q |
126 |
ctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
||||||| || || ||||| ||||||||||||||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
31438637 |
ctatgcggaaggggttgcaatttgcaaaagacatatcttttctaaatcttatattagaatcatatgcttcta |
31438708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 32675480 - 32675533
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttg |
78 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| |
|
|
| T |
32675480 |
gggtattggtgttgtgttgagagataataaaggtgttgaccttgctgctagttg |
32675533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 238
Target Start/End: Complemental strand, 9438596 - 9438525
Alignment:
| Q |
170 |
aatcttatatcagaatcagatgcttcta-tgttgttttgacgt--aatgctcatcaacaatctcccacctat |
238 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
9438596 |
aatcttatagcagaatcagatgtttctaatgtggttttgacgtttaatgctcatcaacaacctccctcctat |
9438525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 15262508 - 15262473
Alignment:
| Q |
28 |
tattggtgttgtggtgagagataatgaaggtgttgt |
63 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15262508 |
tattggtgttgcggtgagagataatgaaggtgttgt |
15262473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 187
Target Start/End: Complemental strand, 19625106 - 19624947
Alignment:
| Q |
28 |
tattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagct |
127 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | |||||| || | ||| ||||||||| || |||||| |||| ||||| ||||||| |
|
|
| T |
19625106 |
tattggtgttttggtgagagataatgaaggtgttgtcattgctactagttaccaacaaaatttttcattatcagattcagaggttgcagaagatttagct |
19625007 |
T |
|
| Q |
128 |
atgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatca |
187 |
Q |
| |
|
|||| || | ||| |||||| |||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
19625006 |
atgcagaagagtttcaaatttttgaaagacatgtcttttctgaatcttataacagaatca |
19624947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 19646251 - 19646085
Alignment:
| Q |
28 |
tattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagct |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| | || || | |||| ||| || |||||| |||| ||||| ||||||| |
|
|
| T |
19646251 |
tattggtgttgtggtgagagataatgaaggtgttgtcattgctgctagttactgacaagtttttttcttaccagattcagaggttgcagaagatttagct |
19646152 |
T |
|
| Q |
128 |
atgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgctt |
194 |
Q |
| |
|
|| || || ||||| ||||| |||||||| |||||| | ||||||||| |||||||| |||||| |
|
|
| T |
19646151 |
atacggaagaatttggaatttttgaaagacatgtcttttgtgaatcttatagcagaatcaaatgctt |
19646085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 1661658 - 1661441
Alignment:
| Q |
24 |
tgggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttt |
123 |
Q |
| |
|
||||||||| |||||| || ||| |||||||| ||| | | ||| |||||||||| || | ||||||||||| | |||||| |||| |||||| || |
|
|
| T |
1661658 |
tgggtattgatgttgtagtaagaaataatgaaagtgatacccttgctgctagttgctgactagtcttttcattaccaaattcagaggttgcagaagcctt |
1661559 |
T |
|
| Q |
124 |
agctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcat |
220 |
Q |
| |
|
|||||||| || ||| |||||| ||||| |||| |||||| | ||||| ||| ||||||||||||||||| |||| || || ||| ||||||||| |
|
|
| T |
1661558 |
ggctatgcggaagggtttgaaatttgcaaaatacatctcttttttgaatctcatagcagaatcagatgcttctaatgtggtcttagcgttgaatgctcat |
1661459 |
T |
|
| Q |
221 |
caacaatctcccacctat |
238 |
Q |
| |
|
||| ||||| |||||||| |
|
|
| T |
1661458 |
caataatcttccacctat |
1661441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 197
Target Start/End: Original strand, 8085908 - 8085962
Alignment:
| Q |
143 |
aaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||| ||||||||||| ||||| |
|
|
| T |
8085908 |
aaatttgcaaaagacatatcttttttgaatcttataatagaatcagatgtttcta |
8085962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 25616638 - 25616423
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||| ||| |||||| | | | || ||||||||||| || |||||| |||| ||| |||||| |
|
|
| T |
25616638 |
gggtattggtattgtg-tgagagataatgaaggtgttgtccttggtgctagctcctggcaagtcttttcattaccagattcagaggttgcagaggcttta |
25616540 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatc |
221 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||| |||||| | ||||||||| ||||||||| ||||||| |||| ||||| ||| |||||| | | |
|
|
| T |
25616539 |
gctatgcggaagggtttggaatttgcaaaagacatgtcttttttgaatcttatagcagaatcagttgcttctaatgtggttttagcgttgaatgctaacc |
25616440 |
T |
|
| Q |
222 |
aacaatctcccacctat |
238 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
25616439 |
aacaatctcccaactat |
25616423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 11790817 - 11790645
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| || ||| |||||||| | | || ||||||||||| || |||||| |||| |||| ||| | |
|
|
| T |
11790817 |
gggtattggtgttgcggtgagagataatgaaggtgttatcgttggtgctagtttctggcaagtcttttcattactagattcagaggttgcagaaacttaa |
11790718 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
|||||| | || | ||| ||||| | |||| || |||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
11790717 |
gctatgtggaagagtttggaatttgctaaaggcaggtcttttctgaatcttatagcagaatcagacgcttcta |
11790645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 9112109 - 9112002
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| | || || |||||||| || ||| || || | |||||||||| |
|
|
| T |
9112109 |
gggtattggtgttgttgtgagagataatgaaggtgttgtcgttgctgctagttgttggcaagtcctttcattactagattcggatgtagcagaagcttta |
9112010 |
T |
|
| Q |
125 |
gctatgcg |
132 |
Q |
| |
|
|||||||| |
|
|
| T |
9112009 |
gctatgcg |
9112002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 14069207 - 14069159
Alignment:
| Q |
29 |
attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagtt |
77 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
14069207 |
attggggttgttgtgagagataatgaaggtgttgtcgttggtgttagtt |
14069159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 14379235 - 14379187
Alignment:
| Q |
29 |
attggtgttgtggtgagagataatgaaggtgttgtcattgatgctagtt |
77 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
14379235 |
attggggttgttgtgagagataatgaaggtgttgtcgttggtgttagtt |
14379187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 16055037 - 16055193
Alignment:
| Q |
42 |
tgagagataatg-aaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgcgaaacaatt |
140 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||| | || ||||||||||| || |||||| |||| |||||||||| |||||||||| | || |
|
|
| T |
16055037 |
tgagagataatggaaggtgttgtcgttgtcgctagttgctggcaagtcttttcattatcagattcagaggttgcagaagctttaactatgcgaaagagtt |
16055136 |
T |
|
| Q |
141 |
taaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
| || ||| | | | |||| ||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
16055137 |
tgaagtttgcgataaacatgacttttttgaatcttatagcagaatcagatgcttcta |
16055193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 32401945 - 32401805
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || ||||| | || ||||||||||| || |||||| |||| |||||| ||| |
|
|
| T |
32401945 |
gggtattggtgttgtggtgagagataatgaaggtgttgtccttagtgttagttcttggcaagtcttttcattaccagattcagaggttgtagaagcctta |
32401846 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttt |
165 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
32401845 |
actatgcgaaagggtttggaatttgcaaaagacatgtcttt |
32401805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 4719276 - 4719220
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccg |
81 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
4719276 |
gggtattggtgttgtggcgagagataatgaagatgttgtcatttgtgctagttgccg |
4719220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 27214305 - 27214133
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| | | |||||| ||| | || ||||||| | | || ||||| |||| |||||||||| |
|
|
| T |
27214305 |
gggtattggtgttgtggtaagagataatgaaggtgttgtcgtagctgctagctgctggaaagtcttttcttgactagactcagaggttgcagaagcttta |
27214206 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttcta |
197 |
Q |
| |
|
| |||||| || ||| | ||| |||||||| | |||| | ||||||||| |||||||||||||||||| |
|
|
| T |
27214205 |
gttatgcggaagggtttggagtttgtgaaagacatgtgttttatgaatcttatagcagaatcagatgcttcta |
27214133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 15908281 - 15908194
Alignment:
| Q |
44 |
agagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagctatgc |
131 |
Q |
| |
|
||||||||||||||||||||| || |||||||| || |||||||||||||| || |||| | |||| | ||||||||||||||| |
|
|
| T |
15908281 |
agagataatgaaggtgttgtcgctgccgctagttgttgacaaatcttttcattaccaggttcataggttgcaaaagctttagctatgc |
15908194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 4719139 - 4719059
Alignment:
| Q |
161 |
tcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatcaacaatctcccacctat |
238 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||| |||| || |||| | |||| ||||||||||||| |||||||| |
|
|
| T |
4719139 |
tcttttctgaatcttatagcagaatcagatgcttctaatgtagtattgagattgaatgttcatcaacaatcttccacctat |
4719059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 44906 - 44804
Alignment:
| Q |
27 |
gtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | |||||| | | || ||||||||||| || |||||| |||| ||||||| || | |
|
|
| T |
44906 |
gtattggtgttgtggtgagagataatgaagatgttgtcattgct-ctagttcctaacaagtcttttcattaccagattcagaggttgcagaagctctaac |
44808 |
T |
|
| Q |
127 |
tatg |
130 |
Q |
| |
|
|||| |
|
|
| T |
44807 |
tatg |
44804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 26024641 - 26024850
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagcttta |
124 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| || | ||| | | || ||| ||||||| || |||||| ||| | |||||||| |
|
|
| T |
26024641 |
gggtattggtgttgttttgagagataatgaaggtgttgtcgttggtgttggttcctggcaagtctcttcattaccagattcagaggttatataagcttta |
26024740 |
T |
|
| Q |
125 |
gctatgcgaaacaatttaaaatttacaaaagacatatcttttctcaatcttatatcagaatcagatgcttct-atgttgttttgacgt--aatgctcatc |
221 |
Q |
| |
|
|||||| || ||| ||||| | ||||| | |||||||| ||||||||| ||||||||||||||||| |||| ||||| ||| |||||||| | |
|
|
| T |
26024741 |
gctatgtagaagggtttggaatttgcgaaagatgtgtcttttctgaatcttatagcagaatcagatgcttctaatgtggttttagcgttgaatgctcacc |
26024840 |
T |
|
| Q |
222 |
aacaatctcc |
231 |
Q |
| |
|
|||||||||| |
|
|
| T |
26024841 |
aacaatctcc |
26024850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 17538814 - 17538917
Alignment:
| Q |
28 |
tattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagctttagct |
127 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| ||| ||| |||| | || || |||||| |||| || || ||| |||| | ||||||||||| |
|
|
| T |
17538814 |
tattgatgttgtggtgagagatgatgaaggtgttgtcgttgctgcaagttcctgacaagtctttttattaccagatttagaggttgcaaaagctttagct |
17538913 |
T |
|
| Q |
128 |
atgc |
131 |
Q |
| |
|
|||| |
|
|
| T |
17538914 |
atgc |
17538917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 120
Target Start/End: Complemental strand, 24310531 - 24310436
Alignment:
| Q |
25 |
gggtattggtgttgtggtgagagataatgaaggtgttgtcattgatgctagttgccgataaatcttttcattaaaagtttcagaagttggagaagc |
120 |
Q |
| |
|
|||||||| || | ||||||||||||| |||||||||||| |||||| ||||||| || ||||||||||| ||| || |||||||| |||||| |
|
|
| T |
24310531 |
gggtattgttgatatggtgagagataacgaaggtgttgtcgttgatgttagttgctcgcaagtcttttcattataagatttagaagttgcagaagc |
24310436 |
T |
|
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Target: scaffold0524 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 10066 - 10022
Alignment:
| Q |
33 |
gtgttgtggtgagagataatgaaggtgttgtcattgatgctagtt |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | |||||||| |
|
|
| T |
10066 |
gtgttgtggtgagagataatgaaggtgttgtcgtcggtgctagtt |
10022 |
T |
|
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