View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_17 (Length: 236)
Name: NF21103_low_17
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 49655059 - 49654859
Alignment:
| Q |
1 |
aacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgtaaaattagccc |
100 |
Q |
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| T |
49655059 |
aacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgtaaaattagccc |
49654960 |
T |
|
| Q |
101 |
cccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaacaaacaaaat |
200 |
Q |
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| T |
49654959 |
c--gactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaacaaacaaaat |
49654862 |
T |
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| Q |
201 |
cag |
203 |
Q |
| |
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||| |
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| T |
49654861 |
cag |
49654859 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 8551505 - 8551537
Alignment:
| Q |
61 |
cagtgttaagactaagatcttctaaatgtaaaa |
93 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
8551505 |
cagtgtcaagactaagatcttctaaatgtaaaa |
8551537 |
T |
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