View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_18 (Length: 224)
Name: NF21103_low_18
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 8240241 - 8240053
Alignment:
| Q |
18 |
atgaacattaatattagtaactgacagcgagtgatgcaacatattcaaaatcgatgcaacaaaaaatggtggtactcatcaactcagtgtaactcaatac |
117 |
Q |
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| T |
8240241 |
atgaacattaatattagtaactgacagcgcatgatgcaacatattcaaaatcgatgcaacaaaaaatggtggtactcatcaactcagtgtaactcaatac |
8240142 |
T |
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| Q |
118 |
atatatgatttggaaagaaaggaatgccataatattttataaacatcatcagccagctcaggagctccttaaccaaatcaagaagattg |
206 |
Q |
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| T |
8240141 |
atatacgatttggaaagaaaggaatgccataatattttataaacatcatcagccagctcaggagctccttaaccaaatcaagaagattg |
8240053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 1456563 - 1456643
Alignment:
| Q |
118 |
atatatgatttggaaagaaaggaatgccataatattttataaacatcatcagccagctcaggagctccttaaccaaatcaa |
198 |
Q |
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| T |
1456563 |
atatatgatttggaaagaaaggaatgccaacatatttcaggaaattcattagtcagctcaggagcttcttcgccaaatcaa |
1456643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 31928751 - 31928662
Alignment:
| Q |
119 |
tatatgatttggaaagaaaggaatgccataatattttataaacatcatcagccagctcaggagctccttaaccaaatcaagaagattgtg |
208 |
Q |
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| T |
31928751 |
tatatgatttggaaagaaaggaatgccataatttttcagaaaattcatcagtcagctcaagagctccttcgccaaatcaaagagattgtg |
31928662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 7317268 - 7317180
Alignment:
| Q |
119 |
tatatgatttggaaagaaaggaatgccataatattttataaacatcatcagccagctcaggagctccttaaccaaatcaagaagattgt |
207 |
Q |
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| T |
7317268 |
tatatgatttggaaagaaagaaatgccagaatatttcataaaatttatcagttagctcaggagctccttcaccaaatcaaagagattgt |
7317180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 29456438 - 29456396
Alignment:
| Q |
125 |
atttggaaagaaaggaatgccataatattttataaacatcatc |
167 |
Q |
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| T |
29456438 |
atttggaaagaaaggaatgacataatatttcataatcatcatc |
29456396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Original strand, 6839871 - 6839950
Alignment:
| Q |
119 |
tatatgatttggaaagaaaggaatgccataatattttataaacatcatcagccagctcaggagctccttaaccaaatcaa |
198 |
Q |
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| T |
6839871 |
tatatgatttggaaagaaaggaatgccagaacttttcagaaaattcatcagtcagctcaggggctccttcgccaaatcaa |
6839950 |
T |
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