View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_2 (Length: 545)
Name: NF21103_low_2
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 533
Target Start/End: Original strand, 27312248 - 27312764
Alignment:
| Q |
17 |
actcaagatcgggaaaagcacattggcttgtgctgtttgtttgaatgagtttcaagacgatgaaacattgcgtttaatccctaaatgtaaccatgtgtac |
116 |
Q |
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| T |
27312248 |
actcaagatcgggaaaagcacattggcttgtgctgtttgtttgaatgagtttcaagacgatgaaacattgcgtttaattcctaaatgtaaccatgtgtac |
27312347 |
T |
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| Q |
117 |
caccatggttgcatcgatatttggcttgtctctcatgatacttgcccagtttgtcgtgctaaccttgctccaagacccgatattgacaccaccgagccta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27312348 |
caccatggttgcatcgatatttggcttgtctctcatgatacttgcccagtttgtcgtgctaaccttgctccaagacccgatattgacaccaccgagccta |
27312447 |
T |
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| Q |
217 |
caatgatatcgaatcagataccagaaggagaagataatcgtcaagaattgagtatacaaatttcaaatgatgaagaagtagaacatattgttgaagagga |
316 |
Q |
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| T |
27312448 |
caatgatatcgaatcagataccagaaggagaagataatcgtcaagaattgagtatacaaatttcaaatgatgaagaagtagaacatattgttgaagagga |
27312547 |
T |
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| Q |
317 |
acaaaagaaagccaacgtggaagtggaaaattcacctaaggtagatgtacttcataggtctaaaacatattctgcaccaacacggtcaagatcaacagga |
416 |
Q |
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| T |
27312548 |
acaaaagaaagccaacgtggaagtggaaaattcacctaaggtagatgtacttcgtaggtctaaaacatattctgcaccaacacggtcaagatcaacagga |
27312647 |
T |
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| Q |
417 |
ttcttatctattctcttgttatcacggtcaaactcaacaggtgtgttggtgcaaccaggtgaggattgtgagaggtttacattgagattacccgataaag |
516 |
Q |
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| T |
27312648 |
ttcttatctattctcttgttatcacggtcaaactcaacaggtgtgttggtgcaaccaggtgaggattgtgagaggtttacactgaggttacccgataaag |
27312747 |
T |
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| Q |
517 |
ttcgaaagcagatgatg |
533 |
Q |
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| T |
27312748 |
ttcgaaagcagatgatg |
27312764 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 32965372 - 32965336
Alignment:
| Q |
45 |
tgtgctgtttgtttgaatgagtttcaagacgatgaaa |
81 |
Q |
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| T |
32965372 |
tgtgctgtttgtttgaatgagtttcaacaagatgaaa |
32965336 |
T |
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