View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_5 (Length: 440)
Name: NF21103_low_5
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 326 - 440
Target Start/End: Complemental strand, 35443393 - 35443279
Alignment:
| Q |
326 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
425 |
Q |
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| T |
35443393 |
ctctaatatttgcgatacgtcaagtggatccgcaatgcatactcttattactcgtcaagatgttgaccaggtaattaattgacctctctctaatgatatg |
35443294 |
T |
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| Q |
426 |
atacacttcactcat |
440 |
Q |
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| T |
35443293 |
atacacttcactcat |
35443279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 35443659 - 35443538
Alignment:
| Q |
46 |
agatacatcaattatttaatgaatttaaaatgtcaaactgtgaattataatatctaaataaaaatgttatttattcagaaagtcaaataatttgattttg |
145 |
Q |
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| T |
35443659 |
agatacatcaattatctaataaatctaaaaagtcaaactgtgaattagaatatctaaataaaaatgttatttattcaaaaagttaaataatttgattttg |
35443560 |
T |
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| Q |
146 |
taccttgaatatataattttat |
167 |
Q |
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| T |
35443559 |
tacattgaatatataattttat |
35443538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 35443666 - 35443707
Alignment:
| Q |
35 |
aaatatatgtcagatacatcaattatttaatgaatttaaaat |
76 |
Q |
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| T |
35443666 |
aaatatatgtcagatacatcaattatttaatgaatttaaaat |
35443707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 26863168 - 26863129
Alignment:
| Q |
37 |
atatatgtcagatacatcaattatttaatgaatttaaaat |
76 |
Q |
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| T |
26863168 |
atatatatcagatacatcaattattcaatgaatttaaaat |
26863129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 12018490 - 12018527
Alignment:
| Q |
38 |
tatatgtcagatacatcaattatttaatgaatttaaaa |
75 |
Q |
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| T |
12018490 |
tatatttcagatacatcaattatttaatgaatctaaaa |
12018527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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