View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_6 (Length: 415)
Name: NF21103_low_6
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 19281991 - 19282378
Alignment:
| Q |
12 |
tcatcaaattcaccatgtgcagcatgcaagtttctcagacgaaagtgcactcaagaatgtgattttgctccttactttctcccaaaaaatccacagcgat |
111 |
Q |
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| T |
19281991 |
tcatcaaattcaccatgtgcagcatgcaagtttctcagacgaaagtgcactcaagaatgtgattttgctccttactttctcccagaaaatccacagcgat |
19282090 |
T |
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| Q |
112 |
tcgcgaatgttcaccgtgtcttcggtgcaagcaacgtcgctaagctcttaaaagagcttgacgtgaaggaccgtgaagacgcggtgaaatctttggcata |
211 |
Q |
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| T |
19282091 |
tcgctaatgttcaccgtgtcttcggtgcaagcaacgtcgctaagctcttaaaagagcttgacgtgaaggaccgtgaagacgcggtgaaatctttggcata |
19282190 |
T |
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| Q |
212 |
cgaggcagagtctcgtataaaagaccctgtctatggatgtgtaggtctcatctcatatctccaacagaagttaagagaaactcaaaatgaactcaccgtt |
311 |
Q |
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| T |
19282191 |
cgaggcagagtctcgtataaaagaccctgtctatggatgtgtaggtctcatctcatatctccaacagaagttaagagaaactcaaaatgaactcaccgtt |
19282290 |
T |
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| Q |
312 |
gcgaaaaaagaactcgccggttataatttgaatcctcaaaccatgcagtgcttgttgatgaattctggaacagttttaatgcctcaac |
399 |
Q |
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| T |
19282291 |
gcgaaaaaagaactcgccggttataatttgaatcctcaaaccatgcagtgcttattgatgaattctggaacagttttaatgcctcaac |
19282378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 6650091 - 6650160
Alignment:
| Q |
10 |
catcatcaaattcaccatgtgcagcatgcaagtttctcagacgaaagtgcactcaagaatgtgattttgc |
79 |
Q |
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| T |
6650091 |
catcatcaaattcaccgtgtgcggcgtgtaagtttctccggcgaaaatgcactcaagagtgtgtttttgc |
6650160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 15262578 - 15262614
Alignment:
| Q |
10 |
catcatcaaattcaccatgtgcagcatgcaagtttct |
46 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
15262578 |
catcctcaaattcaccatgtgcagcatgcaagtttct |
15262614 |
T |
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