View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21103_low_7 (Length: 406)
Name: NF21103_low_7
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 21 - 367
Target Start/End: Complemental strand, 16970779 - 16970439
Alignment:
| Q |
21 |
tcttactgagagttgatgtgaaaagttgggaaattcagaaaatcttgcccttctgcttctgcttctgctgggaccattttggatttaatgcctttttggc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
16970779 |
tcttactgagagttgatgtgaaaagttgggaaattcagaaaatcttg------tgcttctgcttcttctaggaccattttggatttaatgcctttttggc |
16970686 |
T |
|
| Q |
121 |
aacggtaaggttatagactcgtcacaaggagttagcaattgtcatggacctctatctcacgagcagaacaaagtaatacggaaacagaaaagacaatgga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16970685 |
aacggtaaggttatagactcgtcacaaggagttagcaattgtcatggacctctatctcacgagcagaacaaagtaatacggaaacagaaaagacaatgga |
16970586 |
T |
|
| Q |
221 |
atgcaacatggctagctctactactatactgagtaaaaatcttgtatgattatggccataagttgctttttaaaggaatagtatggtggtatgttgcttg |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16970585 |
atgcaacatggctagctctactactatactgagtaaaaatcttgtttgattatggccattagttgctttttaaaggaatagtatggtggtatgttgcttg |
16970486 |
T |
|
| Q |
321 |
cagatgttgttaggggtccaaataattagaggcttccaataacaata |
367 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
16970485 |
cagatgttgttagtggtccaaataattaaaggcttccaataacaata |
16970439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University