View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21103_low_9 (Length: 361)
Name: NF21103_low_9
Description: NF21103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21103_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 341
Target Start/End: Original strand, 28899266 - 28899594
Alignment:
| Q |
13 |
aatatgagcatgaatgggaataaatatacacatataggcaccggnnnnnnnnttagcattgtatcgggcgacatatgaacctacaatatcaaagcgaaga |
112 |
Q |
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| T |
28899266 |
aatatgagcatgaatgggaataaatatacacatataggcaccggaaaaaaaattagcattgtatcgggcgacatatgaacctacaatatcaaagcaaaga |
28899365 |
T |
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| Q |
113 |
caacaagttaacaataggctaatagctaaaagaacaaaataatctttcaagaaacaaatcccattcatccacaactaagtttaatatattgactccaacc |
212 |
Q |
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| T |
28899366 |
caacaagttaacaataggctaatagctaaaagaacaaaataacctttcaagaaacaaatcccattcatccacaactaagtttaatatattgactccaacc |
28899465 |
T |
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| Q |
213 |
tatttatggtgtgtttggtttcgtgtttggcatacatttcttgcgtcccaatatcgtattttctgtgaatataagaagccaggattcctagcttttgctg |
312 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28899466 |
tatttatggtgtgtttggtttcgtgtttggtatacatttcttgcgtcccaatatcgtattttctgtgaatataagaagccaggattcctagcttttgctg |
28899565 |
T |
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| Q |
313 |
gatgcgcgaatgaaaggcatttggtcggg |
341 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28899566 |
gatgcgcgaatgaaaggcatttggtcggg |
28899594 |
T |
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