View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21104_high_1 (Length: 620)
Name: NF21104_high_1
Description: NF21104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21104_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 24 - 603
Target Start/End: Original strand, 5386051 - 5386623
Alignment:
| Q |
24 |
gaagtggcaaatactactgaaactcacacacacaactatggaattttggattcgaatccgcttgaaggcgtctaacctaacaatttcggcattccctgtt |
123 |
Q |
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| T |
5386051 |
gaagtggcaaatactactgaaactcacacacacaattatggaattttggattcgaatccgcttgaaggcgcctaacctaacaatttcggcattccctgtt |
5386150 |
T |
|
| Q |
124 |
gaactagtctttacggaccaataaccacaacttacgaattaaccctaatattagttcattggaaccgattacttcctttgttgagtcgtttgaagaaatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5386151 |
gaactagtctttacggaccaataaccacaacttacggattaaccctaatattagttcattggaaccgattacttcctttgttgagtcgtttgaagaaatt |
5386250 |
T |
|
| Q |
224 |
ttcacgtacatattttgaattagacagatataagagctaagcagcgactaaagtatcaaataaagttgtttattctgatctaaaactacttaccccatca |
323 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5386251 |
ttcacgta------ttgaattagacagatataagagctaagcagtgactaaagtatcaaataaagttgtttattctgatctaaaactacttaccccatca |
5386344 |
T |
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| Q |
324 |
aaagctaaaaccaaaaaaccatttctatgacaagtttggaagtgaggcactgcttcaatatgtcataaaatgatagacatggatataactcaaaatctct |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5386345 |
aaagctaaaaccaaaaaaccatttctatgacaagtttggaagtgaggcactgcttcaatatgtcataaaatgatagacatggatataactcaaaatctct |
5386444 |
T |
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| Q |
424 |
aataaagataatcatcaataaggaaataaaaacaatgaagatgatc-nnnnnnnnnnggtcaagtgaagtggatcttttaactacatgaaagaaaagatc |
522 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5386445 |
aataaagataatcatcattaaggaaataaaaacaatgaagatgatctttttttttttggtcaagtgaagtggatcttttaactacatgaaagaaaagatc |
5386544 |
T |
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| Q |
523 |
atatatatatttgnnnnnnnttatgccacagaggacaaaatgaaacaaagttgtgtatttctaaccatcaaatcctactat |
603 |
Q |
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| T |
5386545 |
--atatatatttgaaaaaaattatgccacagaggacaaaatgaaacaaagttgtgtatttctaaccatcaaatcctactat |
5386623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 26757979 - 26758055
Alignment:
| Q |
40 |
ctgaaactcacacacacaactatggaattttggattcgaatccgcttgaaggcgtctaacctaacaatttcggcatt |
116 |
Q |
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||||||||||||||||||||| || || || |||||||||| |||| | ||||||||||||||| |||||||| |
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| T |
26757979 |
ctgaaactcacacacacaactgtgatgttacgggttcgaatccgggtgaaagtgtctaacctaacaatatcggcatt |
26758055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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