View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21104_high_2 (Length: 479)
Name: NF21104_high_2
Description: NF21104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21104_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 41517615 - 41518070
Alignment:
| Q |
9 |
agcacagacaggactaggattaaagggtgaagcttgggaacagtttaatagtgatttggcagaagctgaaatgggtacttatggtgtaatcatgaattct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41517615 |
agcacagacaggactaggattaaagggtgaagcttgggaacagtttaatagtgatttggcagaagctgaaatgggtacttatggtgtaatcatgaattct |
41517714 |
T |
|
| Q |
109 |
tttgaagagttagagccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagtttggtgcattggtcctgtatcacttagtaacactgattact |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41517715 |
tttgaagagttagagccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagtttggtgcattggtcctgtatcacttagtaacactgattact |
41517814 |
T |
|
| Q |
209 |
tggataagattcaaagaggtaataataataaggtttcaattgatgaatgggagcatttgaagtggcttgattctcagaaacaagggagtgttctctatgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41517815 |
tggataagattcaaagaggtaataataataaggtttcaattgatgaatgggagcatttgaagtggcttgattctcagaaacaagggagtgttctctatgc |
41517914 |
T |
|
| Q |
309 |
atgccttggaagtttatgcaatataacaccactacagttgatagaacttggtttagcattagaagcaacaaaaataccttttatttgggttttaagagaa |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41517915 |
atgccttggaagtttatgcaatataacaccattacagttgatagaacttggtttagcattagaagcaacaaaaataccttttatttgggttttaagagaa |
41518014 |
T |
|
| Q |
409 |
ggaaatgaattagaagaattgaaaaaatggattgaggaaagtggatttgaggaaag |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41518015 |
ggaaatgaattagaagaattgaaaaaatggattgaggaaagtggatttgaggaaag |
41518070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 460
Target Start/End: Original strand, 41536606 - 41537045
Alignment:
| Q |
24 |
aggattaaagggtgaagcttgggaacagtttaatagtgatttggcagaagctgaaatgggtacttatggtgtaatcatgaattcttttgaagagttagag |
123 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||| ||| ||| ||||||||||| |||| |||||| | || ||||||||||||||||||||||| |
|
|
| T |
41536606 |
aggattaaagggtgaagtttggaaacaatttaatgatgacttgcttgaagctgaaataggtagttatgggatgctcgtgaattcttttgaagagttagag |
41536705 |
T |
|
| Q |
124 |
ccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagtttggtgcattggtcctgtatcacttagtaacactgattacttggataagattcaaa |
223 |
Q |
| |
|
||| ||||||||||||| | ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41536706 |
ccaacatatgcaagggattataaaaaggtaagaaatgataaagtttggtgtattggtcctgtatcacttagtaacactgattacttggataaggttcaaa |
41536805 |
T |
|
| Q |
224 |
gaggtaat---aataataaggtttcaattgatgaatgggagcatttgaagtggcttgattctcagaaacaagggagtgttctctatgcatgccttggaag |
320 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||| |||| || |
|
|
| T |
41536806 |
gaggtaataataataataaggtttcaaatgatgaatgggagcacttgaagtggcttgattctcataaacaagggagtgttatctacgcatgctttggcag |
41536905 |
T |
|
| Q |
321 |
tttatgcaatataacaccactacagttgatagaacttggtttagcattagaagcaacaaaaataccttttatttgggttttaagagaaggaaatgaatta |
420 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||| |
|
|
| T |
41536906 |
tttatgcaatttaacaccaccacagttgatagagcttggtttagcattagaagcaacaaaaagaccctttatttgggttttaagagaaggaaatcagtta |
41537005 |
T |
|
| Q |
421 |
gaagaattgaaaaaatggattgaggaaagtggatttgagg |
460 |
Q |
| |
|
||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
41537006 |
gaagagttgaaaaaatggcttgaggagagtggatttgagg |
41537045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 70 - 460
Target Start/End: Complemental strand, 8137028 - 8136638
Alignment:
| Q |
70 |
gaagctgaaatgggtacttatggtgtaatcatgaattcttttgaagagttagagccagcatatgcaagggaatttaaaaaggtaaaaaatgacaaagttt |
169 |
Q |
| |
|
|||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||| ||||||||| || ||||||||| | |||||||||||||||| |
|
|
| T |
8137028 |
gaagctgaaatgagtagttatgggataatcacaaattcttttgaggagttagagccaacatatgcaacagactttaaaaagatgaaaaatgacaaagttt |
8136929 |
T |
|
| Q |
170 |
ggtgcattggtcctgtatcacttagtaacactgattacttggataagattcaaagaggtaataataataaggtttcaattgatgaatgggagcatttgaa |
269 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| || |||| | || |||||||| |||| ||||| |
|
|
| T |
8136928 |
ggtgtattggacctgtatcacttagtaacattgatgacttggataaggttcaaagaggtaatagtaacaaagttttagttcatgaatggaagcacttgaa |
8136829 |
T |
|
| Q |
270 |
gtggcttgattctcagaaacaagggagtgttctctatgcatgccttggaagtttatgcaatataacaccactacagttgatagaacttggtttagcatta |
369 |
Q |
| |
|
|||||| ||||||| || | | ||||||| | ||||||||||||||||||||||| ||| ||||| |||||||||||||||| || || ||||||||| |
|
|
| T |
8136828 |
gtggctaaattctcataaggatgagagtgttatatatgcatgccttggaagtttatgtaatttaacatcactacagttgatagagctagggttagcatta |
8136729 |
T |
|
| Q |
370 |
gaagcaacaaaaataccttttatttgggttttaagagaaggaaatgaattagaagaattgaaaaaatggattgaggaaagtggatttgagg |
460 |
Q |
| |
|
||||||||||||| |||||||||||||||| | ||||| |||||| | |||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
8136728 |
gaagcaacaaaaaaaccttttatttgggttattagagagggaaatcagttagaagagttggaaaaatggattgaggagagtggatttgagg |
8136638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 14220853 - 14220769
Alignment:
| Q |
304 |
tatgcatgccttggaagtttatgcaatataacaccactacagttgatagaacttggtttagcattagaagcaacaaaaatacctt |
388 |
Q |
| |
|
||||||| || ||||||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14220853 |
tatgcataccgtggaagtttctgcgatataacaccaccacagttgatgaaacttggtttagcattagaagcaacaaaaagacctt |
14220769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 429
Target Start/End: Complemental strand, 27229975 - 27229859
Alignment:
| Q |
313 |
cttggaagtttatgcaatataacaccactacagttgatagaacttggtttagcattagaagcaacaaaaataccttttatttgggttttaagagaaggaa |
412 |
Q |
| |
|
||||||||| |||| ||| ||||| | | || |||||||| |||||||| | ||| ||||| |||| | |||||||||||||||| | || ||||||| |
|
|
| T |
27229975 |
cttggaagtatatgtaatctaacattagttcaattgatagagcttggtttgggatttgaagcttcaaatagaccttttatttgggttattagggaaggaa |
27229876 |
T |
|
| Q |
413 |
atgaattagaagaattg |
429 |
Q |
| |
|
|| ||||| | |||||| |
|
|
| T |
27229875 |
atcaattacatgaattg |
27229859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University