View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21104_low_1 (Length: 640)
Name: NF21104_low_1
Description: NF21104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21104_low_1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 36676805 - 36676166
Alignment:
| Q |
1 |
tggggtaggaaagatgggaatgatgtaccaaggatttctgcctaatggtcaattactagctattaagagactattcgactctcatttgtttaaaaggcag |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36676805 |
tggggtaggaaagatgggaatgatgtaccaaggatttctgcctaatggtcaattactagctgttaagagactattcgactctcatttgtttaaaaggcag |
36676706 |
T |
|
| Q |
101 |
atccttttagaaacaacgattatgagtaggtacagacacaaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676705 |
atccttttagaaacaacgattatgagtaggtacagacacaaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatg |
36676606 |
T |
|
| Q |
201 |
catacatgtcaaatgggaggctttccaaatggttgcatcctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaat |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676605 |
catacatgtcaaatgggaggctttccaaatggttgcatcctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaat |
36676506 |
T |
|
| Q |
301 |
agcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaacca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676505 |
agcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaacca |
36676406 |
T |
|
| Q |
401 |
aaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacg |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676405 |
aaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacg |
36676306 |
T |
|
| Q |
501 |
actttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagttt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676305 |
actttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagttt |
36676206 |
T |
|
| Q |
601 |
ttataacgtcgttgataaatctttgaccggggaaggactt |
640 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||||| |
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| T |
36676205 |
ttataatgttattgataaatctttgaccggggaaggactt |
36676166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 36674050 - 36673411
Alignment:
| Q |
1 |
tggggtaggaaagatgggaatgatgtaccaaggatttctgcctaatggtcaattactagctattaagagactattcgactctcatttgtttaaaaggcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||||| | |||||||||||| |
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| T |
36674050 |
tggggtaggaaagatgggaatgatgtaccaaggatttcttcctaatggtcagttactggctattaagagaatatttgactctcggctatttaaaaggcag |
36673951 |
T |
|
| Q |
101 |
atccttttagaaacaacgattatgagtaggtacagacacaaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatg |
200 |
Q |
| |
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||||||| |||||||||||| || ||| ||||||||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
36673950 |
ttccttttggaaacaacgattttgtgtaagtacagacaaaaaaatatagttcccctgcttgggttctgcattaaaggaaaggaacaggttttagcatatg |
36673851 |
T |
|
| Q |
201 |
catacatgtcaaatgggaggctttccaaatggttgcatcctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaat |
300 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |
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| T |
36673850 |
catacatgtcaaatggaaggctttccaaatggttgcatccttcggaaagtgaagtcataagattgaaatggcatcaaagggtcaacattgcacttggaat |
36673751 |
T |
|
| Q |
301 |
agcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaacca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
36673750 |
agcaagagggttatcatggctgcatcatagctgtgatttgggcatagtgcattttaatatatgttcagaatgcatattgctagatgagaattttgaaccc |
36673651 |
T |
|
| Q |
401 |
aaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36673650 |
aaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtggacgacgggaagaaggatgtctacg |
36673551 |
T |
|
| Q |
501 |
actttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagttt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673550 |
actttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagttt |
36673451 |
T |
|
| Q |
601 |
ttataacgtcgttgataaatctttgaccggggaaggactt |
640 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |
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| T |
36673450 |
ttataacgtcattgataaatctttgaccggggaaggactt |
36673411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 622
Target Start/End: Complemental strand, 36684478 - 36683857
Alignment:
| Q |
1 |
tggggtaggaaagatgggaatgatgtaccaaggatttctgcctaatggtcaattactagctattaagagactattcgactctcatttgtttaaaaggcag |
100 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||| ||| || |||||||| |||||||| |||||||||||| ||| || | | ||| |||||||| |
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|
| T |
36684478 |
tggggtgggaaagatgggaatgatgtatcagggaaatctaccaaatggtcagttactagccgttaagagactatctaactatcgtctttttgaaaggcag |
36684379 |
T |
|
| Q |
101 |
atccttttagaaacaacgattatgagtaggtacagacacaaaaatatagttcccatgcttgggttctccattgaaggaaaggaacaggttttggcatatg |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||||| |
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|
| T |
36684378 |
ttccttttagaaacaactattatgagtaggtacagacataaaaatatagttcccatgcttggattctgcattgaaggaaaggaaaggcttttggcatatg |
36684279 |
T |
|
| Q |
201 |
catacatgtcaaatgggaggctttccaaatggttgcatcctttggaaagtgaagtcataagattgaaatggcatgacagggtcaacattgcatttggaat |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||| || ||||||||| ||| ||||||||||||||| ||||| | |
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|
| T |
36684278 |
aatacatgtcaaatggaaggctttccaaatggttgtaccctttgaaaagtgaagtcatccgactgaaatggcctgagagggtcaacattgcacttggatt |
36684179 |
T |
|
| Q |
301 |
agcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatattgctagatgagaactttgaacca |
400 |
Q |
| |
|
||||||||| ||||||||||| ||||||| || |||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||||||| |
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|
| T |
36684178 |
agcaagaggattatcatggctccatcatagctgtgatttgggcatagtgcattttaatatatattcacaatgcatattgctagatgagaattttgaaccc |
36684079 |
T |
|
| Q |
401 |
aaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaacgacgggaagaaggatgtctacg |
500 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
36684078 |
aaaatatccaattttgggcaggcgaaatttatgaatcccaacattgaagatcatctcagcacgatgtttaaagtgaatgacgggaagaaggatgtctacg |
36683979 |
T |
|
| Q |
501 |
actttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaatctatgtggtaaccctttgagttt |
600 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||| ||| || | |||||||| ||| |||||||| | || |||||||| | ||| |
|
|
| T |
36683978 |
actttggaagtgtgctttttgaactgattacaggaaaaacatataacgaactgactcgttcatccaccaccactaatctctatgataacccttcaaattt |
36683879 |
T |
|
| Q |
601 |
ttataacgtcgttgataaatct |
622 |
Q |
| |
|
|||||| | | ||||||||||| |
|
|
| T |
36683878 |
ttataatgccattgataaatct |
36683857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 477 - 640
Target Start/End: Complemental strand, 36695858 - 36695695
Alignment:
| Q |
477 |
acgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaa |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36695858 |
acgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaa |
36695759 |
T |
|
| Q |
577 |
tctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccggggaaggactt |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
36695758 |
tctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggactt |
36695695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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