View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21104_low_4 (Length: 456)
Name: NF21104_low_4
Description: NF21104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21104_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 194 - 429
Target Start/End: Original strand, 30705860 - 30706094
Alignment:
| Q |
194 |
ctagaggcggctctattagaaatgtacgtacaggtaatatgaatgagacattacnnnnnnnnaagggaatgtgaatgagacgttattagcatatgtttat |
293 |
Q |
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| T |
30705860 |
ctagaggcggctctattagaaatgtacgtacaggtaatatgaatgagacattacttttttttaagggaatgtgaatgagacgttattagcatatgtttat |
30705959 |
T |
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| Q |
294 |
agtgtgtcaatgtttagtgcttccataaatgggatgaccgtgcaaccaggaccacagatatgtttccatcaagagaaggtgttacttggttaaatgacac |
393 |
Q |
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| T |
30705960 |
agtgtgtcaatgtttagtgcttccataaatgggatgaccgtgcaaccaggaccacatatatgtttccatcaagagaaggtgttacttggttaaatgacac |
30706059 |
T |
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| Q |
394 |
tgcaaatcttagccatagattttggaggttcaaagt |
429 |
Q |
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| T |
30706060 |
tgcaaatcttagccataga-tttggaggttcaaagt |
30706094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 30705678 - 30705785
Alignment:
| Q |
12 |
atgaacgaacaaacatgacaagaagagacacaaaacaataataccgaactcaaacgacgaaaccacaagataaaaggaaaaaactgatgtaaatgagtga |
111 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30705678 |
atgaacgaacaaacatgacaagaagagatacaaaacaacaataccgaacttaaacgacgaaaccacaagataaaaggaaaaaagtgatgtaaatgagtga |
30705777 |
T |
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| Q |
112 |
tttcgaat |
119 |
Q |
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| T |
30705778 |
ttccgaat |
30705785 |
T |
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