View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21104_low_5 (Length: 411)

Name: NF21104_low_5
Description: NF21104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21104_low_5
NF21104_low_5
[»] chr1 (24 HSPs)
chr1 (257-365)||(36321622-36321731)
chr1 (257-346)||(4521024-4521114)
chr1 (257-365)||(37976828-37976936)
chr1 (269-346)||(33744151-33744229)
chr1 (269-346)||(48811945-48812023)
chr1 (257-347)||(46370833-46370925)
chr1 (286-346)||(15549637-15549697)
chr1 (268-347)||(36621944-36622024)
chr1 (257-365)||(8836490-8836597)
chr1 (289-355)||(9053846-9053912)
chr1 (289-343)||(12590648-12590702)
chr1 (257-364)||(17112703-17112814)
chr1 (257-322)||(1048710-1048775)
chr1 (257-327)||(7481409-7481481)
chr1 (257-325)||(39973892-39973961)
chr1 (269-356)||(9221229-9221317)
chr1 (258-347)||(28672302-28672393)
chr1 (257-346)||(4772022-4772112)
chr1 (257-346)||(37705877-37705967)
chr1 (257-325)||(3047867-3047936)
chr1 (297-338)||(4039626-4039667)
chr1 (297-365)||(8454314-8454382)
chr1 (297-365)||(34596117-34596185)
chr1 (257-364)||(48947204-48947312)
[»] chr8 (21 HSPs)
chr8 (17-144)||(7513500-7513622)
chr8 (257-365)||(7513292-7513401)
chr8 (253-346)||(36348504-36348599)
chr8 (270-355)||(34716515-34716600)
chr8 (269-346)||(5293760-5293838)
chr8 (269-365)||(2445121-2445218)
chr8 (269-365)||(22209418-22209515)
chr8 (289-347)||(26462006-26462064)
chr8 (296-349)||(1576375-1576428)
chr8 (247-327)||(7528262-7528343)
chr8 (252-343)||(39093079-39093172)
chr8 (247-327)||(42801068-42801149)
chr8 (306-357)||(11995160-11995211)
chr8 (269-320)||(13328359-13328410)
chr8 (257-355)||(20279562-20279661)
chr8 (257-355)||(21066189-21066288)
chr8 (268-355)||(37167032-37167119)
chr8 (296-354)||(41422280-41422338)
chr8 (297-365)||(20169715-20169783)
chr8 (269-348)||(32646831-32646910)
chr8 (269-348)||(40949370-40949450)
[»] chr6 (3 HSPs)
chr6 (257-365)||(30509316-30509425)
chr6 (297-355)||(12605995-12606053)
chr6 (286-358)||(13070646-13070718)
[»] chr3 (22 HSPs)
chr3 (257-365)||(38457214-38457322)
chr3 (247-346)||(39400293-39400393)
chr3 (269-346)||(46711930-46712008)
chr3 (257-343)||(37708437-37708524)
chr3 (255-348)||(46188594-46188687)
chr3 (278-346)||(52309189-52309258)
chr3 (255-365)||(31901808-31901918)
chr3 (252-365)||(48322203-48322317)
chr3 (297-365)||(47115310-47115378)
chr3 (275-348)||(40546345-40546420)
chr3 (269-347)||(31681133-31681211)
chr3 (269-347)||(31917483-31917561)
chr3 (269-348)||(50368422-50368500)
chr3 (297-341)||(55110068-55110112)
chr3 (274-348)||(40392409-40392484)
chr3 (269-355)||(44881989-44882075)
chr3 (250-292)||(16867527-16867569)
chr3 (273-341)||(37388423-37388492)
chr3 (297-354)||(38388753-38388810)
chr3 (257-348)||(10921341-10921433)
chr3 (289-341)||(11404739-11404791)
chr3 (277-328)||(54911221-54911273)
[»] chr4 (19 HSPs)
chr4 (257-365)||(37179691-37179800)
chr4 (257-357)||(42370318-42370419)
chr4 (257-365)||(32055337-32055447)
chr4 (257-365)||(39827145-39827255)
chr4 (257-365)||(50086405-50086514)
chr4 (269-348)||(50343850-50343930)
chr4 (269-365)||(54700841-54700936)
chr4 (253-343)||(50774957-50775048)
chr4 (257-346)||(44690279-44690369)
chr4 (297-343)||(10095659-10095705)
chr4 (297-358)||(24324232-24324293)
chr4 (289-354)||(49144796-49144861)
chr4 (269-329)||(10576001-10576061)
chr4 (257-365)||(47560626-47560734)
chr4 (295-346)||(31177258-31177309)
chr4 (257-343)||(44670849-44670936)
chr4 (257-327)||(53737829-53737900)
chr4 (289-354)||(41468117-41468182)
chr4 (289-365)||(41370165-41370241)
[»] chr2 (18 HSPs)
chr2 (252-365)||(2825953-2826067)
chr2 (257-348)||(16717609-16717701)
chr2 (253-346)||(18223110-18223204)
chr2 (257-357)||(13811040-13811140)
chr2 (269-348)||(18227134-18227214)
chr2 (297-355)||(2517251-2517309)
chr2 (273-347)||(19495220-19495294)
chr2 (257-365)||(3882616-3882725)
chr2 (257-347)||(8964392-8964483)
chr2 (273-341)||(9049171-9049240)
chr2 (268-336)||(10204168-10204237)
chr2 (269-348)||(11001458-11001537)
chr2 (252-358)||(27133071-27133178)
chr2 (270-365)||(35477685-35477782)
chr2 (269-365)||(6581561-6581657)
chr2 (269-365)||(13197263-13197359)
chr2 (273-357)||(25622550-25622634)
chr2 (317-365)||(45303579-45303627)
[»] chr7 (15 HSPs)
chr7 (255-358)||(9533523-9533627)
chr7 (257-348)||(33887867-33887958)
chr7 (281-365)||(40065780-40065865)
chr7 (269-340)||(676395-676466)
chr7 (257-365)||(1360536-1360645)
chr7 (257-365)||(10031918-10032027)
chr7 (255-346)||(42911058-42911150)
chr7 (271-346)||(15995902-15995979)
chr7 (287-347)||(35310403-35310463)
chr7 (257-365)||(3256624-3256734)
chr7 (289-338)||(16878740-16878789)
chr7 (299-348)||(28251986-28252035)
chr7 (301-346)||(42890279-42890324)
chr7 (271-340)||(14574746-14574817)
chr7 (297-365)||(44391425-44391493)
[»] chr5 (13 HSPs)
chr5 (247-353)||(10145349-10145456)
chr5 (257-365)||(34032087-34032196)
chr5 (278-353)||(27833299-27833375)
chr5 (269-348)||(36243413-36243492)
chr5 (269-327)||(779098-779156)
chr5 (297-355)||(39099912-39099970)
chr5 (254-347)||(26663632-26663729)
chr5 (254-347)||(26935227-26935324)
chr5 (269-355)||(3758212-3758301)
chr5 (257-326)||(32017454-32017524)
chr5 (253-327)||(35515930-35516004)
chr5 (280-341)||(11844267-11844328)
chr5 (269-348)||(22873483-22873564)
[»] scaffold0047 (1 HSPs)
scaffold0047 (275-323)||(63579-63627)
[»] scaffold0111 (1 HSPs)
scaffold0111 (269-355)||(38917-39004)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 36321731 - 36321622
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||||||||||| |||||||||||||||| ||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||||| | ||||||    
T  36321731 tttaagcataccaaaacaagtaattattctttagaaaagttaaacatttcgatttccaatgcattgattacatgtatttttataaatacttgctatttat 36321632  T
Q  356 agttcttaaa 365  Q
    ||| ||||||    
T  36321631 agtccttaaa 36321622  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 4521114 - 4521024
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||||||||| |||| |||  ||||||||||||||  |||||| ||||  |||| |||||||||||||||||||||||||||||||||||    
T  4521114 tttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatgcattgattacatgtatttttataaatactt 4521024  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 37976828 - 37976936
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttata 356  Q
    ||||||||| | |||||||  |||||| |||||||| || |||||||| |||||||||||  |||| |||  ||||||||||||||| | ||||||||||    
T  37976828 tttaagcattctaaaataaaaaattatactttaaaaagtcaaatattttgattttcaatgttttgaatacgcgtatttttataaatattaaccatttata 37976927  T
Q  357 gttcttaaa 365  Q
    || ||||||    
T  37976928 gtccttaaa 37976936  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 33744229 - 33744151
Alignment:
Q  269 aaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||||||||||||| ||| |||| || |||||||| ||||||||||||||||||||||| | |||| ||||||||||    
T  33744229 aaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcataaatactt 33744151  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 48811945 - 48812023
Alignment:
Q  269 aaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||||||||||||||||| |||| || ||||||||  || | |||||||||||||||| | ||||||||||||||||    
T  48811945 aaaataagtaattattcttttaaaaagtaaaatatttcaatctccaatgcattgattacacgcatttttataaatactt 48812023  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 46370833 - 46370925
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatg--ttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    |||||||||| ||||| ||| |||||||||||||||    ||||| |||| |||||||||||| |||||||||  ||||||| ||||||||||    
T  46370833 tttaagcatatcaaaacaagcaattattctttaaaaaaatttaaacatttcgattttcaatgcgttgattacacatatttttttaaatactta 46370925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 15549637 - 15549697
Alignment:
Q  286 tttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||||| || |||||||| ||||||||||||||||||||||   ||||||||||||||||    
T  15549637 tttaaaaagtaaaatatttcgattttcaatgcattgattacacacatttttataaatactt 15549697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 36621944 - 36622024
Alignment:
Q  268 caaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    ||||||||| |||||||||||||||  ||||||||||| ||||| |||  || |||||||||| ||||||| |||||||||    
T  36621944 caaaataagcaattattctttaaaaaagttaaatattttgatttccaaaacaatgattacatgcatttttaaaaatactta 36622024  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 8836597 - 8836490
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||||  | ||||||  |||||||||||||||  || |||||||| |||||  | |||||| | ||| || |||||||||||||||||||| ||||    
T  8836597 tttaagcatttcgaaataaacaattattctttaaaaaagtcaaatatttcgattt--agtgcattaaatacttgcatttttataaatacttaccacttat 8836500  T
Q  356 agttcttaaa 365  Q
    ||||||||||    
T  8836499 agttcttaaa 8836490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 9053846 - 9053912
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||| |||| ||| ||||||||||||||| ||||||| | |||| |||||||||||| ||||||    
T  9053846 aaaatgtcaaatgtttcgattttcaatgcatttattacatattttttcataaatacttactatttat 9053912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 12590702 - 12590648
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaata 343  Q
    |||| ||||||||||| ||||||||||||||||| |||| ||||||| |||||||    
T  12590702 aaaaagttaaatattttgattttcaatgcattgaatacacgtattttcataaata 12590648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 17112703 - 17112814
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt----aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatt 352  Q
    |||||||||  ||||||||||||||||| ||     |||| || |||||||| ||||| ||||||||||||||||| |||||| ||||||| |||  | |    
T  17112703 tttaagcatggcaaaataagtaattattattcttcaaaaaagtcaaatattttgatttccaatgcattgattacatatattttcataaatagttagtact 17112802  T
Q  353 tatagttcttaa 364  Q
    ||| ||||||||    
T  17112803 tattgttcttaa 17112814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 1048775 - 1048710
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattga 322  Q
    ||||||||||||||| |||  ||||||||||||||| |||||||| ||  ||||||||||| ||||    
T  1048775 tttaagcataccaaattaaaaaattattctttaaaaagttaaatagttcaattttcaatgcgttga 1048710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 7481481 - 7481409
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt--aaaatgttaaatatttagattttcaatgcattgattaca 327  Q
    ||||||||| | |||||||| |||||||||||  |||| |||||||| || ||||||||||| ||||||||||    
T  7481481 tttaagcatgctaaaataagcaattattctttaaaaaaagttaaatacttcgattttcaatgtattgattaca 7481409  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 39973892 - 39973961
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgatta 325  Q
    ||||||||| | ||| |||||||||||||||| |||||||||||  |||  |||||||||||||||||||    
T  39973892 tttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattgatta 39973961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 356
Target Start/End: Complemental strand, 9221317 - 9221229
Alignment:
Q  269 aaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttata 356  Q
    |||||||  |||||||||||| ||| ||||||||||| ||||| ||||||| | | ||||  |||||| ||||||||||||| ||||||    
T  9221317 aaaataaacaattattctttagaaaagttaaatatttcgatttccaatgcaattaatacacatattttcataaatacttaccttttata 9221229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 347
Target Start/End: Complemental strand, 28672393 - 28672302
Alignment:
Q  258 ttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgta-tttttataaatactta 347  Q
    |||||||| | |||||||  ||||||| |||||||  || |||||||| |||||| |||||||||||||||  || ||||||||||||||||    
T  28672393 ttaagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacacatattttttataaatactta 28672302  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 4772022 - 4772112
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||||||||||||  ||| ||||||| ||| |||| ||  ||||||| ||||||||||| ||| ||||||   ||||||||||||||||    
T  4772022 tttaagcataccaaatgaagcaattatttttttaaaaagtagaatatttcgattttcaatgtattaattacacacatttttataaatactt 4772112  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 37705877 - 37705967
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||||||| | ||||| |||||||||| |||| |||  | |||| ||| ||||||||||||||| |||||| || |||| ||||||||||    
T  37705877 tttaagcattcgaaaatgagtaattattttttagaaaactcaaatgttttgattttcaatgcattaattacacgttttttcataaatactt 37705967  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 3047867 - 3047936
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaa-tgttaaatatttagattttcaatgcattgatta 325  Q
    ||||||||| | ||| ||||||||| |||||||||| ||| |||| ||| ||||| ||||||||||||||    
T  3047867 tttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattgatta 3047936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 4039667 - 4039626
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttat 338  Q
    |||||||| ||||| ||||||||||||||||| |||||||||    
T  4039667 aaatatttcgatttccaatgcattgattacatatatttttat 4039626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 8454382 - 8454314
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    ||||| || ||||||||||||||| | |||||| ||||| ||||| | |||||||||| || |||||||    
T  8454382 aaataatttgattttcaatgcatttactacatgcattttcataaaaaattaccatttaaaggtcttaaa 8454314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 34596185 - 34596117
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||||||| ||||||||||||||||||||||  || ||| ||||| | ||| |||||| || |||||||    
T  34596185 aaatatttcgattttcaatgcattgattacacataatttcataaaaagttatcatttaaaggtcttaaa 34596117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 48947204 - 48947312
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||||| ||| |||||||||||| ||| ||||||| |||  |||  |||| ||||||| ||||||||   ||||| ||||| | ||||||||||     
T  48947204 tttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaa 48947303  T
Q  356 agttcttaa 364  Q
    ||| |||||    
T  48947304 agtccttaa 48947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 7513622 - 7513500
Alignment:
Q  17 aatataagcaaaaatttgtaatcaagnnnnnnngtcaaggtgtattttgtcttattataaacaaaatacagggaaagagttgataatcattttcgaatga 116  Q
    ||||||| ||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||     ||||| ||||||||||||||||||     
T  7513622 aatataaacaaaaatttgtaatcaagaaaaaaagtcaaggtgtattttgtcttaatataaacaaaataca-----agagtagataatcattttcgaatgt 7513528  T
Q  117 ataatcacaatagtctttaattccttcc 144  Q
    |||||||||| |||||||||||||||||    
T  7513527 ataatcacaacagtctttaattccttcc 7513500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 7513401 - 7513292
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||||| ||||| ||| |||||||||||| |||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  7513401 tttaagcatatcaaaacaagcaattattctttagaaaaattaaacatttcgattttcaatgcattgattacatgtatttttataaatacttgctatttat 7513302  T
Q  356 agttcttaaa 365  Q
    ||| ||||||    
T  7513301 agtccttaaa 7513292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 36348599 - 36348504
Alignment:
Q  253 actttttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgta-tttttataaatactt 346  Q
    |||||||||||| || |||||||| |||||||||||||||  |||||| |||| |||||||||||||||||||||||||| ||| |||||||||||    
T  36348599 actttttaagcacactaaaataagcaattattctttaaaaaagttaaacattttgattttcaatgcattgattacatgtactttatataaatactt 36348504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 34716600 - 34716515
Alignment:
Q  270 aaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||| ||||||||||||||||| ||||||||||   |||| |||| |||||||||||| ||||| |||||||||||| ||||||    
T  34716600 aaataaataattattctttaaaatattaaatattttagtttttaatgaattgattacatgcattttcataaatacttactatttat 34716515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 5293838 - 5293760
Alignment:
Q  269 aaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||||||||||| ||||||| ||| ||||||||||| |||||| |||||| | |||||||| ||||| ||||||||||    
T  5293838 aaaataagtaattgttctttataaaagttaaatattttgatttttaatgcaataattacatgcattttcataaatactt 5293760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 2445218 - 2445121
Alignment:
Q  269 aaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||||||| ||||||| |||  ||| ||||||||||| ||||||||| ||| |  |||||||||||||||||||||||||| | ||||| | ||||||    
T  2445218 aaaataagcaattattttttttaaaagttaaatatttcgattttcaaggcaatcgttacatgtatttttataaatacttactacttataatccttaaa 2445121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 22209418 - 22209515
Alignment:
Q  269 aaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||| ||| |||||||| ||||||  ||||||||||| ||||| |||  |||||||||||| |||||| |||||||||||| |||||| ||| |||||    
T  22209418 aaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgattacatatattttcataaatacttactatttatggtttttaaa 22209515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 26462006 - 26462064
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    |||||||||||||||| |||||| |||| |||||  |||| ||||||||||||||||||    
T  26462006 aaaatgttaaatattttgatttttaatgtattgaacacatatatttttataaatactta 26462064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 1576428 - 1576375
Alignment:
Q  296 taaatatttagattttcaatgcattgattacatgtatttttataaatacttacc 349  Q
    ||||||||| ||||||||||||||||| |||| ||||||| |||||||| ||||    
T  1576428 taaatatttcgattttcaatgcattgaatacacgtattttcataaatacatacc 1576375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 7528343 - 7528262
Alignment:
Q  247 cgtgatactttttaagcataccaaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattaca 327  Q
    ||||| |||||||||||||   |||||||||||||||||||||  || || |||||||| ||||| |||| |||||||||||    
T  7528343 cgtgacactttttaagcattttaaaataagtaattattctttacgaaagtcaaatatttcgatttccaatacattgattaca 7528262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 39093079 - 39093172
Alignment:
Q  252 tactttttaagcataccaaa-ataagtaattattctttaaaatgtta-aatatttagattttcaatgcattgattacatgtatttttataaata 343  Q
    |||| ||||||||||||||| | ||| |||||||||||||||   || ||||||| || || |||||||||||||||| | |||||||||||||    
T  39093079 tactctttaagcataccaaacaaaagcaattattctttaaaaaagtataatatttcgagttccaatgcattgattacacgcatttttataaata 39093172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 327
Target Start/End: Original strand, 42801068 - 42801149
Alignment:
Q  247 cgtgatactttttaagcataccaaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattaca 327  Q
    ||||| |||||||||| || | ||||||||||||||||||||| ||| |  ||||||||  |||||||||||||| ||||||    
T  42801068 cgtgacactttttaagtattctaaaataagtaattattctttacaaaaggcaaatatttcaattttcaatgcattaattaca 42801149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 11995160 - 11995211
Alignment:
Q  306 gattttcaatgcattgattacatgtatttttataaatacttaccatttatag 357  Q
    ||||| |||||||||||||||  |||||||||||||||||| | ||||||||    
T  11995160 gatttccaatgcattgattactcgtatttttataaatacttgctatttatag 11995211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 320
Target Start/End: Complemental strand, 13328410 - 13328359
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcatt 320  Q
    |||||||  |||||||||||||||||||||||||||  ||||||||| ||||    
T  13328410 aaaataaacaattattctttaaaatgttaaatatttcaattttcaatacatt 13328359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 20279661 - 20279562
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||| | |||||||| ||||||||||| |||| || ||||||||  ||||||||| |||| | |||| | |||||| |||||| |||||| ||||    
T  20279661 tttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaatacattaaatacacgcatttttttaaatatttaccacttat 20279562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 21066288 - 21066189
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||| | |||||||| ||||||||||| |||| || ||||||||  ||||||||| |||| | |||| | |||||| |||||| |||||| ||||    
T  21066288 tttaagcattctaaaataagcaattattctttcaaaaagtcaaatatttcaattttcaatacattaaatacacgcatttttttaaatatttaccacttat 21066189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 37167032 - 37167119
Alignment:
Q  268 caaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||  |||||||||| ||||  ||||||| || ||||| ||||||||||| |||| | ||||| || |||| |||||||||||    
T  37167032 caaaataaacaattattcttcaaaaaattaaatagttcgatttccaatgcattgaatacacgcattttcatgaatagttaccatttat 37167119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 41422338 - 41422280
Alignment:
Q  296 taaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    ||||||||| ||||||||||||||| ||||||| |||||| ||||| | ||| ||||||    
T  41422338 taaatattttgattttcaatgcattaattacatatattttcataaaaaattatcattta 41422280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 20169783 - 20169715
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||||||| |||||| ||||||||||||| || |||||| ||| | | |||||||||| || |||||||    
T  20169783 aaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccatttaaaggtcttaaa 20169715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 32646831 - 32646910
Alignment:
Q  269 aaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    |||||||  ||||||||||| |||| || ||||||||  ||||| |||||||||||||||| || ||| ||||||||||||    
T  32646831 aaaataaacaattattcttttaaaaagtcaaatattttaatttttaatgcattgattacatata-tttcataaatacttac 32646910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 40949370 - 40949450
Alignment:
Q  269 aaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||| ||||||||||| | ||| ||  ||||||| ||||| ||||  ||| |||||||| ||||||||||||||||||    
T  40949370 aaaataaataattattcttcataaaagtctaatatttcgatttccaatatattaattacatgcatttttataaatacttac 40949450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 30509316 - 30509425
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgtt-aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||||||||||||||| |||||||||||||||   | ||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  30509316 tttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgattacatgtatttttataaatacttgctatttat 30509415  T
Q  356 agttcttaaa 365  Q
    ||| ||||||    
T  30509416 agtccttaaa 30509425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 12606053 - 12605995
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||| |||||||||||||||||||| | |  |||| |||||||||||| ||||||    
T  12606053 aaatatttggattttcaatgcattgattatacgctttttcataaatacttactatttat 12605995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 13070718 - 13070646
Alignment:
Q  286 tttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagt 358  Q
    ||||||| ||||||| ||  ||||| |||| |||||||||||| | |||| ||||||| |||| |||||||||    
T  13070718 tttaaaaagttaaatgttgtgatttccaatacattgattacatattttttcataaatagttactatttatagt 13070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 38457322 - 38457214
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttata 356  Q
    ||||||||| | | |||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||  ||||||||||| ||||||     
T  38457322 tttaagcattctataataagcaattattctttaaaaaattaaatattttgattttcaatgcattgattacatgtattttcgtaaatacttactatttatg 38457223  T
Q  357 gttcttaaa 365  Q
    |||||||||    
T  38457222 gttcttaaa 38457214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 346
Target Start/End: Complemental strand, 39400393 - 39400293
Alignment:
Q  247 cgtgatactttttaagcataccaaaataagtaattattctttaaa-atgttaaatatttagattttcaatgcattgattacatgtatttttataaatact 345  Q
    ||||| ||| |||||| |||| ||||||| ||||||||||||||| | |||||| ||||  |||||||||||||| ||||||||||||||||||||||||    
T  39400393 cgtgacactctttaagtatactaaaataattaattattctttaaacaagttaaacattttaattttcaatgcattaattacatgtatttttataaatact 39400294  T
Q  346 t 346  Q
    |    
T  39400293 t 39400293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 46712008 - 46711930
Alignment:
Q  269 aaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||||||||||||||||||||||  || ||| |||| ||||| |||||||||||||||||| ||||||||||||||||    
T  46712008 aaaataagtaattattctttaaaaaagtcaaacattttgatttccaatgcattgattacatgcatttttataaatactt 46711930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 37708437 - 37708524
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaata 343  Q
    ||||||||||  |||||||| ||||| |||||||||  |||||| ||||  |||||||||||| ||||||||||||||||||||||||    
T  37708437 tttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcactgattacatgtatttttataaata 37708524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 46188687 - 46188594
Alignment:
Q  255 tttttaagcataccaaaataagtaattattctttaa-aatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||||||| |||||||||||||||||| ||||| || || ||||| || ||||||| ||||||||| |||||| ||||| ||||||||||||    
T  46188687 tttttaagcattccaaaataagtaattattgtttaagaaagtcaaata-ttcgattttcgatgcattgactacatgcattttcataaatacttac 46188594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 346
Target Start/End: Original strand, 52309189 - 52309258
Alignment:
Q  278 aattattctttaaaatgttaaa-tatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||||||||||||| | |||| ||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  52309189 aattattctttaaaaaggtaaaatatttcgatttccaatgcattgattacacgtatttttataaatactt 52309258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 31901918 - 31901808
Alignment:
Q  255 tttttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    ||||||| ||| | |||||||||||||||| ||||||| || | |||||| |||||  |||  |||||||||||| ||||| |||||||||||  |||||    
T  31901918 tttttaaacattctaaaataagtaattattgtttaaaaagtcatatattttgatttctaatatattgattacatgcattttcataaatacttattattta 31901819  T
Q  355 tagttcttaaa 365  Q
    | || ||||||    
T  31901818 tggtccttaaa 31901808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 48322317 - 48322203
Alignment:
Q  252 tactttttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttacca 350  Q
    |||| ||||||||| | |||||||||||||||| ||| |||| || |||| ||| ||||| |||| |||||||||||||| |||| |||||||| ||| |    
T  48322317 tactctttaagcattctaaaataagtaattatttttttaaaaagtcaaatgtttcgatttccaatacattgattacatgttttttcataaatacctacta 48322218  T
Q  351 tttatagttcttaaa 365  Q
     |||| || ||||||    
T  48322217 cttatggtccttaaa 48322203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 47115378 - 47115310
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||| ||| ||||||||||||||||||||||||| |||| |||||||||||  |||||| || ||||||    
T  47115378 aaatgttttgattttcaatgcattgattacatgttttttgataaatacttattatttatggtccttaaa 47115310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 348
Target Start/End: Original strand, 40546345 - 40546420
Alignment:
Q  275 agtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtattttt-ataaatacttac 348  Q
    |||||||||| |||||||  || |||||||| ||||| |||||||||||||||||| |||||| ||||||||||||    
T  40546345 agtaattattttttaaaaaagtcaaatatttcgatttccaatgcattgattacatgcatttttcataaatacttac 40546420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 347
Target Start/End: Original strand, 31681133 - 31681211
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    |||||||||||||||| ||||||| |  | |||||| |||||  ||| ||||||||||||| ||||| |||||||||||    
T  31681133 aaaataagtaattattgtttaaaaagccatatattttgatttctaatacattgattacatgcattttcataaatactta 31681211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 31917561 - 31917483
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    |||||||||||||||| ||||||| |  | |||||| |||||  ||| ||||||||||||| ||||| |||||||||||    
T  31917561 aaaataagtaattattgtttaaaaagccatatattttgatttctaatacattgattacatgcattttcataaatactta 31917483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 50368500 - 50368422
Alignment:
Q  269 aaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    |||||||||||||||||||| |||| || |||||||| |||||  | ||||||||||  || |||||||||||||||||||    
T  50368500 aaaataagtaattattctttaaaaaagtcaaatattttgatttctattgcattgatt--atatatttttataaatacttac 50368422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 55110068 - 55110112
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaa 341  Q
    |||||||| ||||||||||||||||||||||| |||||| |||||    
T  55110068 aaatatttcgattttcaatgcattgattacatatattttcataaa 55110112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 40392409 - 40392484
Alignment:
Q  274 aagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||||| |||||||||  |||||||||||  ||||  |||||||||||||||| |||||| ||||||| ||||    
T  40392409 aagtaattactctttaaaaaagttaaatatttttatttctaatgcattgattacatatattttcataaatatttac 40392484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 355
Target Start/End: Complemental strand, 44882075 - 44881989
Alignment:
Q  269 aaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||  |||||||||||  ||| ||||||||||| |||||||||   ||||| |||||||||||||| |||||||||||| ||||    
T  44882075 aaaataaacaattattctttttaaaagttaaatattttgattttcaaca-attgaatacatgtatttttacaaatacttaccacttat 44881989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Complemental strand, 16867569 - 16867527
Alignment:
Q  250 gatactttttaagcataccaaaataagtaattattctttaaaa 292  Q
    |||||| ||||||||| || |||||||||||||||||||||||    
T  16867569 gatactctttaagcattcctaaataagtaattattctttaaaa 16867527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Original strand, 37388423 - 37388492
Alignment:
Q  273 taagtaattattctttaaaa-tgttaaatatttagattttcaatgcattgattacatgtatttttataaa 341  Q
    |||||||||||||||||||| ||| |||| |||   ||||||||||||||||||||   |||||||||||    
T  37388423 taagtaattattctttaaaaatgtgaaatttttcagttttcaatgcattgattacacaaatttttataaa 37388492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 38388753 - 38388810
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    |||||||| |||||||| |||||||||||||  |||||||||||| | |||| |||||    
T  38388753 aaatattttgattttcattgcattgattacacatatttttataaaaatttactattta 38388810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 10921341 - 10921433
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttc-aatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||||| | ||||||||||| |||| |||||||  | |||||||| ||||| | |||||||| || |||  |||||| ||||||||||||    
T  10921341 tttaagcattctaaaataagtaactattatttaaaaactcaaatattttgatttacaaatgcattaatcacacatattttcataaatacttac 10921433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 11404739 - 11404791
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaa 341  Q
    |||| |||||||||||  ||||| |||| ||| ||||||||||||||||||||    
T  11404739 aaaaagttaaatattttaatttttaatgtattaattacatgtatttttataaa 11404791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 54911221 - 54911273
Alignment:
Q  277 taattattcttt-aaaatgttaaatatttagattttcaatgcattgattacat 328  Q
    |||||||||||| |||||||||||  |||| ||||||||| ||||||||||||    
T  54911221 taattattcttttaaaatgttaaagttttaaattttcaatacattgattacat 54911273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 37179691 - 37179800
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||||||||||| ||||||||||| |||| ||| || ||| |||| ||||| ||||| |||||||| |||||||||||||||||||| | ||||||    
T  37179691 tttaagcataccaaaacaagtaattattttttagaaaagtcaaacatttcgatttccaatgtattgattatatgtatttttataaatacttgctatttat 37179790  T
Q  356 agttcttaaa 365  Q
    ||| ||||||    
T  37179791 agtccttaaa 37179800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 257 - 357
Target Start/End: Complemental strand, 42370419 - 42370318
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgta-tttttataaatacttaccatttat 355  Q
    |||||||||||||||| ||| ||||||||||||||| || ||||||||  |||||||||||||| |||||||| | ||||||||||||||| | ||||||    
T  42370419 tttaagcataccaaaacaagcaattattctttaaaaagtaaaatattttaattttcaatgcattaattacatgcattttttataaatacttgctatttat 42370320  T
Q  356 ag 357  Q
    ||    
T  42370319 ag 42370318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 32055447 - 32055337
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttta-aaatgttaaatattta-gattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    ||||||||||| |||| ||| |||||||||||| ||| || ||| ||||  ||||| ||||||||||||||||||||||||||||||||||| | |||||    
T  32055447 tttaagcatacaaaaacaagcaattattctttagaaaagtcaaacattttcgatttccaatgcattgattacatgtatttttataaatacttgctattta 32055348  T
Q  355 tagttcttaaa 365  Q
    |||| ||||||    
T  32055347 tagtccttaaa 32055337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 39827255 - 39827145
Alignment:
Q  257 tttaagcataccaaaataagtaa-ttattctttaaaa-tgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    |||||||||| ||||| ||| || ||||||||||||| ||| ||| ||||  ||||||||| |||||||||| |||| |||||||||||||||| |||||    
T  39827255 tttaagcatatcaaaacaagcaaattattctttaaaaatgtcaaaaatttcaattttcaattcattgattacttgtaattttataaatacttactattta 39827156  T
Q  355 tagttcttaaa 365  Q
    |||| ||||||    
T  39827155 tagtccttaaa 39827145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 50086514 - 50086405
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgtt-aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||| ||| |||||||||  |||||||||||||||   | |||||||| ||||||||||||||||| ||||  |||||| |||||| ||||||| ||||    
T  50086514 tttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaatacacatattttcataaatgcttaccacttat 50086415  T
Q  356 agttcttaaa 365  Q
    ||||||||||    
T  50086414 agttcttaaa 50086405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 50343930 - 50343850
Alignment:
Q  269 aaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    |||||||||||||||||||| |||| || ||||||||  |||||||||| |||||||| ||||||||| |||||| |||||    
T  50343930 aaaataagtaattattctttaaaaaagtcaaatattttaattttcaatgtattgattatatgtattttcataaattcttac 50343850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 54700936 - 54700841
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    ||||||||||||||||| |||||| || |||||||| ||||| ||| ||| |||||||||| ||||||| |||||||||| | |||| | |||||||    
T  54700936 aaaataagtaattattc-ttaaaaagtcaaatattttgatttccaaggcaatgattacatgcatttttaaaaatacttactacttatgggtcttaaa 54700841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 50774957 - 50775048
Alignment:
Q  253 actttttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaata 343  Q
    |||||||||| || | |||||||||||||||||||| |||| ||||||||||| |||||||||   ||||||||||  |||||| |||||||    
T  50774957 actttttaagtattctaaaataagtaattattctttaaaaaagttaaatattttgattttcaacatattgattacacatattttcataaata 50775048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 44690369 - 44690279
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    ||||| ||||| |||||||||||||||  |||||||  ||||||||||| ||||||||||| | | ||||||| |||||| ||||||||||    
T  44690369 tttaaacatactaaaataagtaattatcttttaaaaaagttaaatatttcgattttcaatgtaataattacatatattttcataaatactt 44690279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 10095705 - 10095659
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaata 343  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||    
T  10095705 aaatatttcgattttcaatgcaatgattacatgcatttttataaata 10095659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 358
Target Start/End: Complemental strand, 24324293 - 24324232
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagt 358  Q
    ||||||||  ||||||||||||| ||||||||  ||||||||||||||||||  ||||||||    
T  24324293 aaatattttaattttcaatgcatagattacatacatttttataaatacttactctttatagt 24324232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 49144796 - 49144861
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    |||| |||||| |||| ||||||| ||||||||||||||| ||||||||| || | ||||||||||    
T  49144796 aaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccattta 49144861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 10576001 - 10576061
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatg 329  Q
    |||||||||||||||| || ||||  | |||||||| ||||| ||||||||||||||||||    
T  10576001 aaaataagtaattatttttcaaaaaatcaaatattttgatttccaatgcattgattacatg 10576061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 47560626 - 47560734
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttata 356  Q
    ||||| ||| |||||||||| ||||||| || ||||  | |||| ||| |||||| ||| ||||||||||| | ||||| || ||||||||| ||||||     
T  47560626 tttaatcattccaaaataagcaattatttttaaaaaaatcaaatgttttgatttttaatacattgattacacgcattttcattaatacttactatttatg 47560725  T
Q  357 gttcttaaa 365  Q
    || ||||||    
T  47560726 gtccttaaa 47560734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 31177258 - 31177309
Alignment:
Q  295 ttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||||||| ||||||||||||||| ||||||  | |||||||||||||||    
T  31177258 ttaaatattttgattttcaatgcattaattacacatttttttataaatactt 31177309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 44670936 - 44670849
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatg-ttaaatatttagattttcaatgcattgattacatgtatttttataaata 343  Q
    ||||||||||| |||| || |||||||  |||||||   |||||||||| ||||| ||||||| | ||||||| ||||||||||||||    
T  44670936 tttaagcatactaaaacaaataattatcttttaaaaaaattaaatatttcgatttccaatgcaataattacatatatttttataaata 44670849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 53737900 - 53737829
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgtt-aaatatttagattttcaatgcattgattaca 327  Q
    ||||||| | |||||||||| |||||||||||||||  || |||||||| ||||| ||||||||||| ||||    
T  53737900 tttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattgaataca 53737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 41468117 - 41468182
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    |||| ||||||||||  |||||   ||||||||||||||||||||||||| || | ||||||||||    
T  41468117 aaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccattta 41468182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 41370241 - 41370165
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||| |||||||||||  |||||||||||||||||||||   ||||| ||||| |||||| ||| | ||| ||||||    
T  41370241 aaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaa 41370165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 2826067 - 2825953
Alignment:
Q  252 tactttttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttacca 350  Q
    |||| ||||||||||| |||||||| ||||||| |||||||  || |||||||| ||||| ||||||||||||||||   |||||||||||||||||| |    
T  2826067 tactctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttttataaatacttacta 2825968  T
Q  351 tttatagttcttaaa 365  Q
     |||||| |||||||    
T  2825967 cttatagctcttaaa 2825953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 16717609 - 16717701
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatg-ttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||||| | ||||||||||||||||||||||||   |||||||||| ||||| ||| |||||||||| ||| ||||| ||||||||||||    
T  16717609 tttaagcattctaaaataagtaattattctttaaaaaaattaaatattttgatttccaaagcattgattatatgcattttcataaatacttac 16717701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 18223110 - 18223204
Alignment:
Q  253 actttttaagcataccaaaataagtaattattctttaaaatgtta-aatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||||||||||||||||| ||| |||||||||||||||   || |||||||  |||| |||||||||||||| | | ||||||||||||||||    
T  18223110 actttttaagcataccaaaacaagcaattattctttaaaaaaatagaatatttcaatttccaatgcattgattatacgcatttttataaatactt 18223204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 357
Target Start/End: Original strand, 13811040 - 13811140
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||| ||||||| ||| |||||||||||||||  || ||||||||  |||| |||||||||||| ||| |||||||||||||||||| | ||||||    
T  13811040 tttaagca-accaaaacaagcaattattctttaaaaaagtaaaatattttaatttccaatgcattgatcacacgtatttttataaatactttctatttat 13811138  T
Q  356 ag 357  Q
    ||    
T  13811139 ag 13811140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 18227134 - 18227214
Alignment:
Q  269 aaaataagtaattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||||||||||||||| | ||| || |||||||| |||||||||||||||||||| ||  ||||| ||||||||||||    
T  18227134 aaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgattaaatacattttcataaatacttac 18227214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 2517309 - 2517251
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||  ||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  2517309 aaatatttcaattttcaatgcattgattacacgtattttcataaatacttactatttat 2517251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 347
Target Start/End: Original strand, 19495220 - 19495294
Alignment:
Q  273 taagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    |||||||||||| ||| ||| || |||||||| ||||| ||||||||||||||||   |||||||||||||||||    
T  19495220 taagtaattattattttaaaagtcaaatatttcgatttccaatgcattgattacacccatttttataaatactta 19495294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 3882616 - 3882725
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaatgtt-aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||| | |||||||| ||||||||||||||| | | |||||||| | ||||||||||||||||||||   ||||| || | ||||||| | ||||    
T  3882616 tttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgattacacacattttcatgagtacttactacttat 3882715  T
Q  356 agttcttaaa 365  Q
     |||||||||    
T  3882716 ggttcttaaa 3882725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 8964392 - 8964483
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    ||||||||| | ||| |||||||||||||||| |||| || ||||||||  |||| ||||||||||||||||   ||||| |||||||||||    
T  8964392 tttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaatactta 8964483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 9049240 - 9049171
Alignment:
Q  273 taagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaa 341  Q
    |||||||||||||||| |||||||||||| |||  |||||||||||||| ||||||   |||||||||||    
T  9049240 taagtaattattcttttaaaatgttaaatttttcaattttcaatgcattaattacacaaatttttataaa 9049171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 10204168 - 10204237
Alignment:
Q  268 caaaataagtaattattctttaaaatgtt-aaatatttagattttcaatgcattgattacatgtattttt 336  Q
    |||||||| ||||||||||| ||||  || |||| ||| |||||||||||||||||||||||| ||||||    
T  10204168 caaaataaataattattcttcaaaaaattcaaatgtttcgattttcaatgcattgattacatgcattttt 10204237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 11001537 - 11001458
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    |||||||| ||||||| ||||||| || |||| ||| ||||||||||  ||| |||||| || |||| ||||||||||||    
T  11001537 aaaataagcaattattttttaaaaagtcaaatgtttcgattttcaatatattaattacacgttttttcataaatacttac 11001458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 358
Target Start/End: Original strand, 27133071 - 27133178
Alignment:
Q  252 tactttttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttacca 350  Q
    |||| ||||| ||||| |||||||| |||||||||||||||  || | | | || ||||| |||||||||||||| ||| ||||||| ||| |||||| |    
T  27133071 tactctttaaacatactaaaataagcaattattctttaaaaaagtcatacaattcgatttccaatgcattgattatatgcatttttaaaaacacttacta 27133170  T
Q  351 tttatagt 358  Q
     |||||||    
T  27133171 cttatagt 27133178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 365
Target Start/End: Complemental strand, 35477782 - 35477685
Alignment:
Q  270 aaataagtaattattcttt--aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    ||||||| |||||||||||  |||| || |||||||| ||||| |||  || |||| ||||| ||||||| |||||||||| | |||||| |||||||    
T  35477782 aaataagcaattattctttaaaaaaagtcaaatatttcgatttccaagacaatgatgacatgcatttttaaaaatacttactacttataggtcttaaa 35477685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 6581561 - 6581657
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||||||||||| ||| || ||||  | |||| ||| |||| |||||||||||||||||    |||| ||||||| |||| | ||||||||||||||    
T  6581561 aaaataagtaataatttttaaaaaaatcaaatgttttgattctcaatgcattgattacacactttttcataaatagttactacttatagttcttaaa 6581657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 13197263 - 13197359
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||||||| |||||||   ||||| || ||||||||  ||||| |||||||| |||||||  ||||||||||| | ||| |||||| || |||||||    
T  13197263 aaaataagaaattatttcataaaaagtcaaatatttcaatttttaatgcattaattacataaatttttataaaaaattatcatttaaagatcttaaa 13197359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 25622550 - 25622634
Alignment:
Q  273 taagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatag 357  Q
    |||||||||||| || ||||| | |||||||   |||||||||||||| ||||||| | |||| ||||||| |||| | ||||||    
T  25622550 taagtaattatttttaaaaatatcaaatattacaattttcaatgcattaattacatattttttcataaatatttactacttatag 25622634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 45303579 - 45303627
Alignment:
Q  317 cattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    ||||||||||||| ||||| |||||||||||| |||||| || ||||||    
T  45303579 cattgattacatgcattttcataaatacttactatttatggtccttaaa 45303627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 9533627 - 9533523
Alignment:
Q  255 tttttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattt 353  Q
    |||||||||||| ||||| ||| ||||||| ||| ||||  | |||||||| |||||||||||||||||||||| | |||||||||||||||||  ||||    
T  9533627 tttttaagcatatcaaaacaagcaattatttttttaaaaaataaaatattttgattttcaatgcattgattacacgcatttttataaatacttattattt 9533528  T
Q  354 atagt 358  Q
    |||||    
T  9533527 atagt 9533523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 348
Target Start/End: Complemental strand, 33887958 - 33887867
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||||| ||||||||| |||||||||||| |||| || ||||||||  |||||||||||||||||||||| |||||| ||||||||||||    
T  33887958 tttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattacat-tattttcataaatacttac 33887867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 365
Target Start/End: Complemental strand, 40065865 - 40065780
Alignment:
Q  281 tattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    ||||||||||||  ||||||||||| |||||||||| ||| || ||||||||||||||||||||||||||| ||||  ||||||||    
T  40065865 tattctttaaaaaagttaaatattttgattttcaatacatcgaatacatgtatttttataaatacttaccacttatgattcttaaa 40065780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 676466 - 676395
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataa 340  Q
    ||||||||||||||||  |||||| ||||||||||| |||||| |||||||||||||||  |||||||||||    
T  676466 aaaataagtaattatttattaaaaagttaaatatttcgattttaaatgcattgattacacatatttttataa 676395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 365
Target Start/End: Original strand, 1360536 - 1360645
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||| ||||||| |||||||||| |||||||  ||||||| ||| ||||| ||||||||||||||||    ||||||||||||| ||| | ||||    
T  1360536 tttaagcattccaaaattagtaattattttttaaaaaagttaaatgtttcgatttccaatgcattgattacacacttttttataaatacatactacttat 1360635  T
Q  356 agttcttaaa 365  Q
    ||| ||||||    
T  1360636 agtccttaaa 1360645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 10032027 - 10031918
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||| ||||||| |||||||||| ||| |||| ||||||| ||| ||||| ||||||||||||||||    |||| |||||||| ||| ||||||    
T  10032027 tttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgattacacactttttcataaatacatactatttat 10031928  T
Q  356 agttcttaaa 365  Q
    ||| ||||||    
T  10031927 agtccttaaa 10031918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 42911058 - 42911150
Alignment:
Q  255 tttttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||||| |||| |||||||| |||||||||||||||  ||  || ||||  ||||||||||||  ||||||||||||||||||||||||||    
T  42911058 tttttaagtatactaaaataagcaattattctttaaaaaagtcgaacatttcaattttcaatgcaccgattacatgtatttttataaatactt 42911150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 15995902 - 15995979
Alignment:
Q  271 aataagtaattattctttaaaat--gttaaatatttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||||| || ||||||||||||   ||||||||||| ||||||||||||||||||||||  |||||| |||| |||||    
T  15995902 aataagcaactattctttaaaaaaagttaaatatttcgattttcaatgcattgattacacatattttcataattactt 15995979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 35310403 - 35310463
Alignment:
Q  287 ttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatactta 347  Q
    |||||| |||||||| ||||||||| ||  |||||||||||| |||||| |||||||||||    
T  35310403 ttaaaaagttaaataattagatttttaagacattgattacatatattttcataaatactta 35310463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 3256734 - 3256624
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt--aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattta 354  Q
    |||||||||  ||||||||| |||||||||||  |||| || |||| ||| ||||| ||||||| ||| ||||  |||||| ||||||||||| || |||    
T  3256734 tttaagcatttcaaaataagcaattattctttaaaaaaagtcaaatgtttcgatttccaatgcactgaatacacatattttcataaatacttatcactta 3256635  T
Q  355 tagttcttaaa 365  Q
    | || ||||||    
T  3256634 tggtccttaaa 3256624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 16878740 - 16878789
Alignment:
Q  289 aaaatgttaaatatttagattttcaatgcattgattacatgtatttttat 338  Q
    |||| ||||||||||| |||| |||||||||||||||||  |||||||||    
T  16878740 aaaaagttaaatatttcgattctcaatgcattgattacaaatatttttat 16878789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 28252035 - 28251986
Alignment:
Q  299 atatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    |||||| |||||||||||||||||||| ||  ||||| ||||||||||||    
T  28252035 atatttcgattttcaatgcattgattatatacattttcataaatacttac 28251986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 42890324 - 42890279
Alignment:
Q  301 atttagattttcaatgcattgattacatgtatttttataaatactt 346  Q
    |||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  42890324 atttcgatttccaatacattgattacatgtatttttaaaaatactt 42890279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 14574746 - 14574817
Alignment:
Q  271 aataagtaattattctttaaaat--gttaaatatttagattttcaatgcattgattacatgtatttttataa 340  Q
    |||||| || ||||||||||||   |||||||| || ||||||||||||||||||||||  |||||| ||||    
T  14574746 aataagcaactattctttaaaaaaagttaaatacttcgattttcaatgcattgattacacatattttcataa 14574817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 44391493 - 44391425
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttatagttcttaaa 365  Q
    |||||||| |||||| ||||||||||||| || |||||| ||| | | |||||||||| || |||||||    
T  44391493 aaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccatttaaaggtcttaaa 44391425  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 10145456 - 10145349
Alignment:
Q  247 cgtgatactttttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtatttttataaatact 345  Q
    ||||| ||| |||||||| |||||||||| ||| ||||||||||||  || |||||||| |||||| |||||||| ||||||   |||||||||||||||    
T  10145456 cgtgacactctttaagcacaccaaaataaataaatattctttaaaaaagtaaaatattttgattttgaatgcattaattacacacatttttataaatact 10145357  T
Q  346 taccattt 353  Q
    ||| ||||    
T  10145356 tactattt 10145349  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 365
Target Start/End: Complemental strand, 34032196 - 34032087
Alignment:
Q  257 tttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    ||||||||| | |||||||||||||||||||| |||| |||||||||||  ||||  || ||| |||||||||| ||||||| |||||||||| | ||||    
T  34032196 tttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttcaaaggcaatgattacatgcatttttaaaaatacttactacttat 34032097  T
Q  356 agttcttaaa 365  Q
     | |||||||    
T  34032096 gggtcttaaa 34032087  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 353
Target Start/End: Complemental strand, 27833375 - 27833299
Alignment:
Q  278 aattattcttta-aaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccattt 353  Q
    |||||||||||| ||| || |||||||| ||||| |||||||||||||||||| ||||| |||||||||||| ||||    
T  27833375 aattattctttacaaaagtcaaatatttcgatttacaatgcattgattacatgcattttcataaatacttactattt 27833299  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 36243413 - 36243492
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttac 348  Q
    ||||||| |||||||| |||||||  | |||||||| |||||| ||||||||||||||||| ||||| ||||| ||||||    
T  36243413 aaaataaataattattatttaaaaaatcaaatattttgatttttaatgcattgattacatgcattttcataaacacttac 36243492  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 327
Target Start/End: Original strand, 779098 - 779156
Alignment:
Q  269 aaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattaca 327  Q
    ||||| |||||||||| ||||||| ||||||| ||| ||||| ||||||||||||||||    
T  779098 aaaattagtaattattttttaaaaagttaaatgtttcgatttccaatgcattgattaca 779156  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 39099912 - 39099970
Alignment:
Q  297 aaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||| |||||||||||||| || ||||  ||||||||||||||||||||| ||||    
T  39099912 aaatatttcgattttcaatgcatcgaatacacatatttttataaatacttaccacttat 39099970  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 347
Target Start/End: Original strand, 26663632 - 26663729
Alignment:
Q  254 ctttttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattaca---tgtatttttataaatactta 347  Q
    |||||||||||| | |||||||| ||||||| ||| |||| || |||||||| ||||| ||||| ||||||||||   | | ||||||||||||||||    
T  26663632 ctttttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacattttttttttataaatactta 26663729  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 347
Target Start/End: Original strand, 26935227 - 26935324
Alignment:
Q  254 ctttttaagcataccaaaataagtaattattcttt-aaaatgttaaatatttagattttcaatgcattgattaca---tgtatttttataaatactta 347  Q
    |||||||||||| | |||||||| ||||||| ||| |||| || |||||||| ||||| ||||| ||||||||||   | | ||||||||||||||||    
T  26935227 ctttttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacattttttttttataaatactta 26935324  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 3758212 - 3758301
Alignment:
Q  269 aaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattga--ttacatgtatttttataaatacttaccatttat 355  Q
    |||||||  |||||||||||||||  || |||||||| |||||||||||||||||   ||||| | |||| |||||||||||| ||||||    
T  3758212 aaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattgaatatacattttttttcataaatacttacaatttat 3758301  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 32017524 - 32017454
Alignment:
Q  257 tttaagcataccaaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattac 326  Q
    ||||| |||| ||||| ||| |||||||||||||||  || ||||||||  ||||||||||||||||||||    
T  32017524 tttaaacatatcaaaacaagcaattattctttaaaaaagtaaaatatttcaattttcaatgcattgattac 32017454  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 35515930 - 35516004
Alignment:
Q  253 actttttaagcataccaaaataagtaattattctttaaaatgttaaatatttagattttcaatgcattgattaca 327  Q
    ||||||||| ||| | |||| ||| |||||||| || ||| || ||||||||| ||||||||| |||||||||||    
T  35515930 actttttaaacattctaaaagaagaaattattcgttgaaaagtcaaatatttaaattttcaatacattgattaca 35516004  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 11844267 - 11844328
Alignment:
Q  280 ttattctttaaaatgttaaatatttagattttcaatgcattgattacatgtatttttataaa 341  Q
    ||||||||||||| |||||||||||  |||| |||| ||||||||| ||| ||||| |||||    
T  11844267 ttattctttaaaaagttaaatattttaatttccaatacattgattatatgcattttcataaa 11844328  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 22873483 - 22873564
Alignment:
Q  269 aaaataagtaattattctttaaaat-gttaaatatttagattttcaatgcattgattacatgtattt-ttataaatacttac 348  Q
    |||||||  |||||||||||||||  |||||||||||  ||||| |||||||||| |||| |||||| | ||||||||||||    
T  22873483 aaaataaagaattattctttaaaaaagttaaatattttaatttttaatgcattgaatacacgtatttataataaatacttac 22873564  T

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Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 323
Target Start/End: Original strand, 63579 - 63627
Alignment:
Q  275 agtaattattctttaaaatgttaaatatttagattttcaatgcattgat 323  Q
    |||||||||||||||||| || ||||||||  |||||||||||||||||    
T  63579 agtaattattctttaaaaagtcaaatattttaattttcaatgcattgat 63627  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 38917 - 39004
Alignment:
Q  269 aaaataagtaattattctttaaaa-tgttaaatatttagattttcaatgcattgattacatgtatttttataaatacttaccatttat 355  Q
    |||||||||||||||  ||||||| ||||||| || | |||||  ||  |||||||| |||||||||||||||||| |||| ||||||    
T  38917 aaaataagtaattatcttttaaaaatgttaaacatgttgatttctaagacattgattgcatgtatttttataaatatttactatttat 39004  T

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