View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21104_low_8 (Length: 229)
Name: NF21104_low_8
Description: NF21104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21104_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43664069 - 43664296
Alignment:
| Q |
1 |
taacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctctttagg |
100 |
Q |
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| T |
43664069 |
taacacaagattagtgttagtttaacttgcattgcataaagtttcttgacttt----------aattttaagcacttttagtaactattctctctttagg |
43664158 |
T |
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| Q |
101 |
aaagaaatggataataattgaagaa----------acagattttggacttcaaaagaaagagcatcacgagaaagctaaactgctgtcaggaaattgcaa |
190 |
Q |
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| T |
43664159 |
aaagaaatgaataataattgaagaacattaaagaaacagattt-ggacttcaaaacaaagaacatcacgagaaagctaaactgctgtcaggaaattgcaa |
43664257 |
T |
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| Q |
191 |
ctcaaaagtgaatgaattaaattcaatcactgtaaataa |
229 |
Q |
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| T |
43664258 |
ctcaaaagtgaatgaattaaattcaatcactgtaaataa |
43664296 |
T |
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Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 24559863 - 24559738
Alignment:
| Q |
1 |
taacacaagattagtgttagtttaacttgcattgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctctttagg |
100 |
Q |
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| T |
24559863 |
taacacaagattagtgttagtttaacttgcattgtataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctctttagg |
24559764 |
T |
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| Q |
101 |
aaagaaatggataataattgaagaaa |
126 |
Q |
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| T |
24559763 |
aaagaaatgaataataattgaagaaa |
24559738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 19138512 - 19138577
Alignment:
| Q |
32 |
ttgcataaagtttcttgactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
97 |
Q |
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| T |
19138512 |
ttgcataaagttactttactttttgctttgtaaattttaagcacttttagtaactattctctcttt |
19138577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 51815461 - 51815408
Alignment:
| Q |
171 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaattaaattcaatcactgta |
224 |
Q |
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| T |
51815461 |
ctgctgtcaggaaattgcaactcaaaagtgaatgaaataaattcaatcattgta |
51815408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 51815564 - 51815510
Alignment:
| Q |
72 |
gcacttttagtaactattctctctttaggaaagaaatggataataattgaagaaa |
126 |
Q |
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| T |
51815564 |
gcacttttattaactcttctctctttaggaaagaaatggataatagttgaagaaa |
51815510 |
T |
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