View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21105_high_4 (Length: 562)
Name: NF21105_high_4
Description: NF21105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21105_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 20 - 557
Target Start/End: Complemental strand, 7027699 - 7027161
Alignment:
| Q |
20 |
aaagtccttgcaataatattagtttatatctatatatacaattgagtgtgcacattagttagccaaaacatgtgctatcttcgatgtcttccggaagatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7027699 |
aaagtccttgcaataatattagtttatatctatata--caattgagtatgcacattagttagccaaaacatgtgctatcttcgatgtcttccggaagatt |
7027602 |
T |
|
| Q |
120 |
tcgcaggagtatcctcaacttagtcatgttttcatttcatcatgtcctctgtacaaataaatgatccagaaagacctcaaagctaacatcatccgtaaag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7027601 |
tcgcaggagtatcctcaacttagtcatgttttcatttcatcatgtcctctgtacaaataaatgatccagaaagacctcaaagctaacatcatccgtaaag |
7027502 |
T |
|
| Q |
220 |
ataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacaatttaactataccagtagaagttgagcctgcacattatacacgaacgcca |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7027501 |
ataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacgatttaactatactagtagaagttgagcctgcacattatacacgaacgcca |
7027402 |
T |
|
| Q |
320 |
aacatgtcgaagtctatgaaggtaaggtaacttgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaatatg |
419 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7027401 |
aacatgtcaaagtctatgaaggtgaggtaacttgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaatatg |
7027302 |
T |
|
| Q |
420 |
catcatcatgaggatctcgt---aactgagatatttgactcaaattaactgaactgacagtgtgaagataagatcatttgtaaagttgtcaattgccgat |
516 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7027301 |
catcatcatgaggatctcgtagcaactgagatatttgactcaaattaactgaactgacagtgtgaagataagatcatatgtaaagttgtcaattgccgat |
7027202 |
T |
|
| Q |
517 |
ggccaaaactccgtcatataaacgtggaactttgacctatg |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7027201 |
ggccaaaactccgtcatataaacgtggaactttgacctatg |
7027161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 177 - 327
Target Start/End: Complemental strand, 2977458 - 2977308
Alignment:
| Q |
177 |
taaatgatccagaaagacctcaaagctaacatcatccgtaaagataatatcgcctccagagagtgaagcttcaatggtatatgttgcagaacaatttaac |
276 |
Q |
| |
|
||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||||| |||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
2977458 |
taaatgatcaaggaagacgtcaaagctaacatcatccgtaaagataatgtcccctccagggagtgaagcttcggtgttatatgttgcagaaggatttaac |
2977359 |
T |
|
| Q |
277 |
tataccagtagaagttgagcctgcacattatacacgaacgccaaacatgtc |
327 |
Q |
| |
|
| | | || |||| | ||||||||||| | | || ||| |||||||||||| |
|
|
| T |
2977358 |
tttgctagaagaaatcgagcctgcacaatgtgcatgaatgccaaacatgtc |
2977308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 2977247 - 2977160
Alignment:
| Q |
352 |
tgggatctatggcgatcacaaacaacaagataaggcacagtaaaatctctctttgattaataaatatgcatcatcatgaggatctcgta |
440 |
Q |
| |
|
||||||| ||| ||||||||||||| || |||||||| ||| ||||||||| |||| ||||| || ||||||||||||| |||||| |
|
|
| T |
2977247 |
tgggatccatgctgatcacaaacaaccaggcgaggcacaggaaa-tctctctttcattattaaatctgaatcatcatgaggagctcgta |
2977160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University