View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21105_low_10 (Length: 270)
Name: NF21105_low_10
Description: NF21105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21105_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 34771714 - 34771960
Alignment:
| Q |
18 |
gattagttaatgccaactgtatttgacagttctat--gtttctgg-tttcatatgaaagtagttagagaaggtagtttcttacttgtatggtaagaaatc |
114 |
Q |
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| T |
34771714 |
gattagttaatgccaactgtatttgacagttctatatgtttctgggtttcatatgaaagtagttagagaaggtagttacttacttgtatggtaagaaatc |
34771813 |
T |
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| Q |
115 |
atatatgttagaaatagctagcttatggtgcaactcatcacttgcataaatcttgtatgcctttcattcaatgattcaaggagaactagtgaatcattat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34771814 |
atatatgttagaaatagctagcttatggtgcaactcatcacttgcataaatcttgtatgcctttcattcaatgattcaaggagaactaatgaatcattat |
34771913 |
T |
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| Q |
215 |
cctattgtttgtgatttttacctgtcaaacacattgttcagaataat |
261 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34771914 |
cctattgtttgtgattttttcctgtcaaacacattgttcagaataat |
34771960 |
T |
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