View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21105_low_2 (Length: 608)
Name: NF21105_low_2
Description: NF21105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21105_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 34015003 - 34014419
Alignment:
| Q |
17 |
aaacaaaatggcatgtatcaaatagatgaattatttttgtttaatatatgacctaagtaagtccatattaattattacgtaccttgatgtttccaattag |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34015003 |
aaacaaaatggcttgtatcaaatagatgaattatttttgttcaatatatgacctaagtaagtccatattaattattacgtaccttgatgtttccaattag |
34014904 |
T |
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| Q |
117 |
catagtgactagaaggaggccactggttaatataatagtgttgaaaacgacttccatcctttccgttgtactctggaggttcccaaaagtgctgaccaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34014903 |
catagtgactagaaggaggccactggttaatataatagtgttgaaaacgacttccatcctttccgttgtactctggaggttcccaaaagtgctgaccaca |
34014804 |
T |
|
| Q |
217 |
tcaacaaaaaacttttgtgacaatgagatatataaagtgcatatgaagcatccttaactacaacaacggtaccaataatgcatgaatcacgtacatggta |
316 |
Q |
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| T |
34014803 |
tcaacaaaaaacttttgtgacaatgagatatataatgtgcatatgaagcatccttaactacaacaacggtaccaataatgcatgaatcacgtacatggta |
34014704 |
T |
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| Q |
317 |
ttttgttactattcaattcaatatgtcatcatgaattgtccacattttaccgtaatataaaggtttgcagcgtaaccatagtcattagtcatcatcgcaa |
416 |
Q |
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| T |
34014703 |
ttttgttactattcaattcaatatgtcatcatgaattgtccacattttaccataatataaaggtttgcagcgtaaccatagtcattagtcatcatcgcaa |
34014604 |
T |
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| Q |
417 |
ctacaatttaaaatcatgaagtgtacaatgtgatgagaaaatacctgagagtcattaggccccaaaagataggaaggagtatcttttcaattcgactatt |
516 |
Q |
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| T |
34014603 |
ctacaatttaaaatcatgaaatgtacaatgtgatgagaaaatacctgagagtcattaggccccaaaagataggaaggagtatcttttcaattcgactatt |
34014504 |
T |
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| Q |
517 |
atttgtaacaagttgaacactccattcataaactccaaattcatagttatcagcactagctaaacatgtagaccttgcttctgtg |
601 |
Q |
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| T |
34014503 |
atttgtaacaagttgaacactccattcataaactccaaattcatagttatcagcactagctaaacatgtagaccttgcttctgtg |
34014419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 22847837 - 22847724
Alignment:
| Q |
96 |
taccttgatgtttccaattagcatagtgactagaaggaggccactggttaatataatagtgttgaaaacgacttccatcctttccgttgtactctggagg |
195 |
Q |
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||||||||||||||| || | ||||||||||||||| || ||||| || || || || |||||||||| ||||| | || |||||||| |||| |||| |
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| T |
22847837 |
taccttgatgtttccgatcaacatagtgactagaagaagtccactagtcaagattatgatgttgaaaactacttctagccaatccgttgtgctctcgagg |
22847738 |
T |
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| Q |
196 |
ttcccaaaagtgct |
209 |
Q |
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| T |
22847737 |
tttccaaaagtgct |
22847724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 394
Target Start/End: Original strand, 10164103 - 10164137
Alignment:
| Q |
360 |
attttaccgtaatataaaggtttgcagcgtaacca |
394 |
Q |
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| T |
10164103 |
attttaccgcaatataaaggtttgcagcgtaacca |
10164137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 26331705 - 26331745
Alignment:
| Q |
356 |
ccacattttaccgtaatataaaggtttgcagcgtaaccata |
396 |
Q |
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| T |
26331705 |
ccacattttaccgcaatataaaggttcgcagtgtaaccata |
26331745 |
T |
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