View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21105_low_6 (Length: 476)
Name: NF21105_low_6
Description: NF21105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21105_low_6 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0349 (4 HSPs) |
| | |
|
| [»] scaffold0419 (2 HSPs) |
| | |
|
| [»] scaffold0277 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 50)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Complemental strand, 26803090 - 26802650
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26803090 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
26802991 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26802990 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaataactaatacttgtttaaaaacgtatata |
26802891 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26802890 |
agaaaggtatttcccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttg |
26802791 |
T |
|
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| | | ||||||||| |
|
|
| T |
26802790 |
ggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccatgttatccttatcattttg |
26802691 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactac |
456 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
26802690 |
aaaccttttttcatgctcagccaatgcttcaccatagctac |
26802650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Original strand, 27592560 - 27593003
Alignment:
| Q |
17 |
taagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgta |
116 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
27592560 |
taagggctgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgt--- |
27592656 |
T |
|
| Q |
117 |
ctaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaata---cttgtttaaaaacgtata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
27592657 |
ctaacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtata |
27592756 |
T |
|
| Q |
214 |
taagaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagt |
313 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27592757 |
taaaaaaggtatttcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagt |
27592856 |
T |
|
| Q |
314 |
tgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27592857 |
tgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattt |
27592956 |
T |
|
| Q |
414 |
tgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27592957 |
tgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
27593003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 27679594 - 27679150
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
27679594 |
gtaagggctgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgt-- |
27679497 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaata---cttgtttaaaaacgtat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
27679496 |
-ctaacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat |
27679398 |
T |
|
| Q |
213 |
ataagaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaag |
312 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27679397 |
ataaaaaaggtatttcccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaag |
27679298 |
T |
|
| Q |
313 |
ttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27679297 |
ttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatgtttttcggatcatt |
27679198 |
T |
|
| Q |
413 |
ttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27679197 |
ttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
27679150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 27705942 - 27706385
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
||||||| || ||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
27705942 |
gtaagggatgtcgactgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgt-- |
27706039 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaata---cttgtttaaaaacgtat |
212 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
27706040 |
-ctaacaacatcccaatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat |
27706138 |
T |
|
| Q |
213 |
ataagaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaag |
312 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27706139 |
ataaaaaaggtatttccc-tttaaactttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaag |
27706237 |
T |
|
| Q |
313 |
ttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcatt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27706238 |
ttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcatt |
27706337 |
T |
|
| Q |
413 |
ttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27706338 |
ttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
27706385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 31 - 460
Target Start/End: Original strand, 27677173 - 27677597
Alignment:
| Q |
31 |
tgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatcaca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||||| |
|
|
| T |
27677173 |
tgatcttgttggagatgtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagtgt---ctaacaacatcaca |
27677269 |
T |
|
| Q |
131 |
atcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaac-gtatataagaaaggtatttcc |
229 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||| |||||||| |||||||||||| |
|
|
| T |
27677270 |
atcacatccatgtact---aatgtattatacatttctaactatttcgacatataaataactaatagtacttttaaaactgtatataaaaaaggtatttcc |
27677366 |
T |
|
| Q |
230 |
catttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccaggagga |
329 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27677367 |
cttttaacctttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaagttgggtacccaggagga |
27677466 |
T |
|
| Q |
330 |
ctatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27677467 |
ctatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgcttttcggatcattttgaaacctcttttcat |
27677566 |
T |
|
| Q |
430 |
gctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27677567 |
gctcagccaatgcttcaccataactaccttt |
27677597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 460
Target Start/End: Original strand, 27604242 - 27604688
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||| ||||||| |||||| | || |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27604242 |
gtaagggctgacgactgatcttgttggagatttctttcactatctttccaataagctcgtattcatatctattcatgtccaataagataagttagtatgt |
27604341 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtac--tcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtata |
213 |
Q |
| |
|
| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27604342 |
a---acaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgtaaa |
27604438 |
T |
|
| Q |
214 |
taagaaaggtattt---cccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaa |
310 |
Q |
| |
|
||| |||||||||| | ||||||||||| || |||||||||||| ||||||| ||||| ||| |||||| ||||||||||||||||||||| ||| |
|
|
| T |
27604439 |
taaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatgtag |
27604538 |
T |
|
| Q |
311 |
agttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatca |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||| | | |||| |
|
|
| T |
27604539 |
tgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctcatca |
27604638 |
T |
|
| Q |
411 |
ttttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||| ||||||||||| |
|
|
| T |
27604639 |
ttttgaaacctttttttatgctcagccaatgcttgaccgtaactaccttt |
27604688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 27427150 - 27427587
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
27427150 |
gtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagtatgt |
27427249 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||| || ||| |
|
|
| T |
27427250 |
aacaacatca-cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaata |
27427348 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttg |
315 |
Q |
| |
|
| |||||| || | |||||| |||||||||| ||||| ||| ||| || || |||| |||| |||| | |||| |||| ||||||||| | |
|
|
| T |
27427349 |
aaaaaggtgttacacatttaggctttaagatg---gtattgaggaatagaaattaaataaattaaatgcaaaa-agcaaaacaggaattaagtaaatagg |
27427444 |
T |
|
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
||||||| || | ||||||||||| || ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
27427445 |
cgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttg |
27427544 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
27427545 |
aaacctattttcatgctcagccaatgctttaccatacctacct |
27427587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 280 - 460
Target Start/End: Original strand, 27698297 - 27698477
Alignment:
| Q |
280 |
aatataaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttcca |
379 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27698297 |
aatacaaaagggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttcca |
27698396 |
T |
|
| Q |
380 |
tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27698397 |
tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctttgccataactaccttt |
27698477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 28786882 - 28786670
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
28786882 |
gtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattcatgtcatataagataagttagtatg- |
28786784 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||||| || |
|
|
| T |
28786783 |
--taacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaat |
28786686 |
T |
|
| Q |
215 |
aagaaaggtatttccc |
230 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
28786685 |
agaaaaggtgtttccc |
28786670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 28793003 - 28792791
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
28793003 |
gtaagggctgacgactgatcttgttggagatgtatttgactatatctccaataaacttgtattcatatctattaatgtccgataagataagttagtatg- |
28792905 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||||| || |
|
|
| T |
28792904 |
--taacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacgtaaat |
28792807 |
T |
|
| Q |
215 |
aagaaaggtatttccc |
230 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
28792806 |
agaaaaggtgtttccc |
28792791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 28781745 - 28781516
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
28781745 |
gtaagtgctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagtatg- |
28781647 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||| | |||| ||||||||||||||| || |
|
|
| T |
28781646 |
--taacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtttaaaaacgtaaat |
28781549 |
T |
|
| Q |
215 |
aagaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
| ||| || ||||||||||| |||||||||| |
|
|
| T |
28781548 |
agaaaaagtgtttcccatttaggctttaagatg |
28781516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 27718218 - 27718362
Alignment:
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
27718218 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttg |
27718317 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27718318 |
aaacctcttttcatgctcagccaatgcttcaccataactaccttt |
27718362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 27610841 - 27610985
Alignment:
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
27610841 |
ggtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttg |
27610940 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27610941 |
aaacctcttttcatgctcagccaatgcttcaccataactaccttt |
27610985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 26 - 370
Target Start/End: Complemental strand, 26647113 - 26646773
Alignment:
| Q |
26 |
acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaaca |
125 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| | | | ||||| |
|
|
| T |
26647113 |
acgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagataagttagtacatgc-accaaca |
26647015 |
T |
|
| Q |
126 |
tcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataagaa-aggta |
224 |
Q |
| |
|
|||||| |||| |||||| | ||||||||||||| |||||||| ||| ||||||||||||| | |||||||||||||||| | |||| || | || |
|
|
| T |
26647014 |
tcacaaatacattgatgtaccgagaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtg |
26646915 |
T |
|
| Q |
225 |
tttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccag |
324 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||| || || || || ||| ||||||||||| ||||||| | | |||||||||||| |||||||| |
|
|
| T |
26646914 |
tttcctatttaagctttaagatgagatt-ttgtggaaaaaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtaccc-- |
26646818 |
T |
|
| Q |
325 |
gaggactatcatggtagccggacaagttagcagcctggctcagagc |
370 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
26646817 |
-aggactataatggtatccggacaagttagcagcttgggtcagagc |
26646773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 26 - 370
Target Start/End: Complemental strand, 26753081 - 26752741
Alignment:
| Q |
26 |
acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaaca |
125 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| | | | ||||| |
|
|
| T |
26753081 |
acgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcatatctattcatgtcccacaagataagttagtacatgc-accaaca |
26752983 |
T |
|
| Q |
126 |
tcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataagaa-aggta |
224 |
Q |
| |
|
|||||| |||| |||||| | ||||||||||||| |||||||| ||| ||||||||||||| | |||||||||||||||| | |||| || | || |
|
|
| T |
26752982 |
tcacaaatacattgatgtaccgagaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtg |
26752883 |
T |
|
| Q |
225 |
tttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccag |
324 |
Q |
| |
|
||||| |||||| ||||||||||||||| |||| || || || || ||| ||||||||||| ||||||| | | |||||||||||| |||||||| |
|
|
| T |
26752882 |
tttcctatttaagctttaagatgagatt-ttgtggaaaaaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtaccc-- |
26752786 |
T |
|
| Q |
325 |
gaggactatcatggtagccggacaagttagcagcctggctcagagc |
370 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
26752785 |
-aggactataatggtatccggacaagttagcagcttgggtcagagc |
26752741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 27698124 - 27698301
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||| | |||| ||||||||||| |
|
|
| T |
27698124 |
gtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcatatctactcgtgtcgagtaagaaaagttagtatga |
27698223 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatac |
196 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27698224 |
a---acaacatcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataactaatac |
27698301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 28 - 432
Target Start/End: Complemental strand, 25539175 - 25538772
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaac-aacat |
126 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| | || ||| || || |
|
|
| T |
25539175 |
gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagataagttagaacata--aactaaaat |
25539078 |
T |
|
| Q |
127 |
cacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgttt-aaaaacgtatataagaaaggtat |
225 |
Q |
| |
|
|| ||||||||||||||| | | |||||||||| || |||||| | ||| ||||||||||||||| | |||||||| |||||| | ||| ||| || | |
|
|
| T |
25539077 |
caaaatcacatccatgtattgagaatatattatgcaattctaatttttttgacatataaataacttacacttgttttaaaaacattaatagaaaatgtgt |
25538978 |
T |
|
| Q |
226 |
ttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccagg |
325 |
Q |
| |
|
| || |||||| ||||||| |||||||| || || || | ||||||||||||| || ||||||| | |||||||||||||| ||||||||| | |
|
|
| T |
25538977 |
t-cctatttaagttttaagagtagattatttaggcataaaaattaatgaaataaaatatagaaaggaaaaacaagatttaagtaaagtggggtacccatg |
25538879 |
T |
|
| Q |
326 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
425 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||| | ||||| |||||| |||| | ||||||||||||| || |||||||||||||| | |
|
|
| T |
25538878 |
aggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctct |
25538779 |
T |
|
| Q |
426 |
tcatgct |
432 |
Q |
| |
|
||||||| |
|
|
| T |
25538778 |
tcatgct |
25538772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 231 - 458
Target Start/End: Complemental strand, 26862040 - 26861819
Alignment:
| Q |
231 |
atttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccaggaggac |
330 |
Q |
| |
|
||||||| || |||||||||||| | || ||| ||| || |||||| ||||||||||| |||| ||||||||| || |||| |||||||||||| | |
|
|
| T |
26862040 |
atttaactttaaagatgagattactctagaatagaaattaaagaaagaaaatataaaaaggaa---taggatttatgttaagtggggtacccagga---c |
26861947 |
T |
|
| Q |
331 |
tatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatg |
430 |
Q |
| |
|
|| ||||||||| |||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||| | | ||||||||||||||| |||||||| |
|
|
| T |
26861946 |
taaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttttcatg |
26861847 |
T |
|
| Q |
431 |
ctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|| ||||||||||||||||||| ||||| |
|
|
| T |
26861846 |
cttagccaatgcttcaccataaatacct |
26861819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 28 - 432
Target Start/End: Complemental strand, 26143500 - 26143097
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatc |
127 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| |||| ||||||||||||||||||||||||||||| ||||||| |||| | ||| | || ||| |
|
|
| T |
26143500 |
gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcatgtccaataagataaattagaaaatac-actaaaatc |
26143402 |
T |
|
| Q |
128 |
acaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgttt-aaaaacgtatataagaaaggtatt |
226 |
Q |
| |
|
| ||||||||||||||| | | |||||||||| || |||||||| ||| ||||||||||||||| | |||||||| |||||| | ||| ||| || || |
|
|
| T |
26143401 |
aaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaaacattaatagaaaatgtgtt |
26143302 |
T |
|
| Q |
227 |
tcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccagga |
326 |
Q |
| |
|
|| |||||| |||| ||| |||||||| || || || | ||||||||||||| || ||||||| | | |||||||||||| ||||||||| || |
|
|
| T |
26143301 |
-cctatttaagctttgagagtagattatttaggcataaaaattaatgaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtacccatga |
26143203 |
T |
|
| Q |
327 |
ggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctctttt |
426 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||| | ||||| |||||| |||| | ||||||||||||| | |||||||||||||| || |
|
|
| T |
26143202 |
ggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctctt |
26143103 |
T |
|
| Q |
427 |
catgct |
432 |
Q |
| |
|
|||||| |
|
|
| T |
26143102 |
catgct |
26143097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 27610658 - 27610782
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
27610658 |
gtaagggttgacgactgatcttgttggagatgtatttgactatctctccagtaaactcgtattcatatctattcatgcccaataagataagttagtatg- |
27610756 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgt |
143 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
27610757 |
--tgacaacatcacaatcacatccatgt |
27610782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 262 - 458
Target Start/End: Complemental strand, 26884564 - 26884371
Alignment:
| Q |
262 |
ttgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctg |
361 |
Q |
| |
|
||||| || |||||| ||||||||||| | |||||| |||||||||||||| || |||||| || ||| |||||||||||||||||||||| | || |
|
|
| T |
26884564 |
ttgaaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccggacaagttagcaacttg |
26884468 |
T |
|
| Q |
362 |
gctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||| | | ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
26884467 |
cctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttcaccataactacct |
26884371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 27718037 - 27718156
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27718037 |
gtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagataagttagtatg- |
27718135 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatc |
138 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
27718136 |
--tgacaacatcacaatcacatc |
27718156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 28 - 432
Target Start/End: Complemental strand, 25580354 - 25579951
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatc |
127 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| |||| ||||||||||||||||||||| ||||||| |||||||||||| | ||| | || ||| |
|
|
| T |
25580354 |
gattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcatatctattcgtgtccaataagataagttagaacatac-actaaaatc |
25580256 |
T |
|
| Q |
128 |
acaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgttt-aaaaacgtatataagaaaggtatt |
226 |
Q |
| |
|
| ||||||||||||||| | | || ||||||| || ||||| || ||| || |||||| ||||| | |||||||| |||||| | ||| ||| | || |
|
|
| T |
25580255 |
aaaatcacatccatgtattgagaaaatattattcaattctaccttttttgaaatataattaacttacacttgttttaaaaacattaatagaaaatctgtt |
25580156 |
T |
|
| Q |
227 |
tcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccagga |
326 |
Q |
| |
|
|| |||||| ||| ||||| ||||||||| || | || ||||||||||||||| || ||||||| | | |||||||||||| ||||||||| || |
|
|
| T |
25580155 |
-cctatttaagcttgaagattagattattgaggcataacaattaaagaaataaaatatagaaaggaaaaagaagttttaagtaaagtggggtacccatga |
25580057 |
T |
|
| Q |
327 |
ggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctctttt |
426 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||| | ||||| |||||| |||| | ||||||||||||| | |||||||||||||| || |
|
|
| T |
25580056 |
ggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctctt |
25579957 |
T |
|
| Q |
427 |
catgct |
432 |
Q |
| |
|
|||||| |
|
|
| T |
25579956 |
catgct |
25579951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 260 - 458
Target Start/End: Original strand, 27530983 - 27531178
Alignment:
| Q |
260 |
aattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcc |
359 |
Q |
| |
|
||||||| || |||||| |||||||||||||||||||||||||||||||||||| || |||||| | ||| ||| | ||| ||||||||||| || |
|
|
| T |
27530983 |
aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacccatgtt---tataatgctggccagacaagttagccgct |
27531079 |
T |
|
| Q |
360 |
tggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| |||| | | ||||||||||||| | |||| |||| |||| |||||||||||||| |||||| |
|
|
| T |
27531080 |
tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgcttcaccatatctacct |
27531178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 458
Target Start/End: Complemental strand, 28786616 - 28786484
Alignment:
| Q |
326 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
425 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
28786616 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt |
28786517 |
T |
|
| Q |
426 |
tcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |
|
|
| T |
28786516 |
tcatgcccagccaatgcttcaccataacgacct |
28786484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 326 - 458
Target Start/End: Complemental strand, 28792737 - 28792605
Alignment:
| Q |
326 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
425 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
28792737 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt |
28792638 |
T |
|
| Q |
426 |
tcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |
|
|
| T |
28792637 |
tcatgcccagccaatgcttcaccataacgacct |
28792605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 326 - 452
Target Start/End: Complemental strand, 28781477 - 28781351
Alignment:
| Q |
326 |
aggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttt |
425 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
28781477 |
aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt |
28781378 |
T |
|
| Q |
426 |
tcatgctcagccaatgcttcaccataa |
452 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
28781377 |
tcatgtccagccaatgcttcaccataa |
28781351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 25483691 - 25483512
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatc |
127 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||| | ||| | || | | |
|
|
| T |
25483691 |
gattgatattgttggagatgtattggactatcttctcaataaacttgtgttcatatctattcatgtccaataagataagttagaacatac-actaaaacc |
25483593 |
T |
|
| Q |
128 |
acaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaac |
208 |
Q |
| |
|
| ||||| ||||||| | | | ||||||| || || |||||||| ||| ||||||||||||||| | |||||||| ||||| |
|
|
| T |
25483592 |
aaaatcatatccatgcattgagaatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaac |
25483512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 26056554 - 26056375
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatc |
127 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||| |||||| ||||| |||||||||||||||| ||| |||||||| | ||| | | ||| |
|
|
| T |
26056554 |
gattgatcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaataaggtaagttagaacatac-actagaatc |
26056456 |
T |
|
| Q |
128 |
acaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaac |
208 |
Q |
| |
|
| ||||||||||||||| | |||||||||||| || |||||||| ||| ||||||||||||||| | ||| |||| ||||| |
|
|
| T |
26056455 |
aaaatcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac |
26056375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 26076524 - 26076345
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatc |
127 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||| |||||| ||||| |||||||||||||||| ||| |||||||| | ||| | | ||| |
|
|
| T |
26076524 |
gattgatcttgttggagatgccttcgactatcttctcaataaacttgcattcagatctattcatgtccaataaggtaagttagaacatac-actagaatc |
26076426 |
T |
|
| Q |
128 |
acaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaac |
208 |
Q |
| |
|
| ||||||||||||||| | |||||||||||| || |||||||| ||| ||||||||||||||| | ||| |||| ||||| |
|
|
| T |
26076425 |
aaaatcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagttttaaaac |
26076345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 27724775 - 27724828
Alignment:
| Q |
407 |
atcattttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27724775 |
atcattttgaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
27724828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 31285203 - 31285059
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||| ||||||| |||| ||||| |||||| |
|
|
| T |
31285203 |
gtaagggcacacgattgatcttgttggagatgtatttgactatgtctccaataaaatcatattcatatctgttcatgttcaactagatatgttagtccaa |
31285104 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataa-tatattata |
160 |
Q |
| |
|
|| |||||||| |||||||||| |||||| | |||| ||||||||| |
|
|
| T |
31285103 |
ac-aacaacatgacaatcacattcatgtattgataattatattata |
31285059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 27530840 - 27530936
Alignment:
| Q |
17 |
taagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtat |
113 |
Q |
| |
|
|||||||| |||| | ||| ||||||| |||| || |||||||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27530840 |
taagggctcacgactaatcctgttggaaatgtcttcgactatctttccaataaactcgtattcatatctattcatgtccaataagataagttagtat |
27530936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 25511570 - 25511430
Alignment:
| Q |
28 |
gattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatc |
127 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||| |||||||||||| |||||||||||||||| ||| |||||||| | ||| | | ||| |
|
|
| T |
25511570 |
gattgatcttgttggagatgtcttcgactatcttctcaataaacttgtattcagatctattcatgtccaataaggtaagttagaacatac-actagaatc |
25511472 |
T |
|
| Q |
128 |
acaatcacatccatgtactcataatatattatacatttctaa |
169 |
Q |
| |
|
| ||||||||||||||| | |||||||||||| || |||||| |
|
|
| T |
25511471 |
aaaatcacatccatgtattgataatatattatgcaattctaa |
25511430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26623915 - 26623819
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| | |||| || | ||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
26623915 |
gtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatctgttcatgtccagctagatatgttagta |
26623819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #36
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 26729892 - 26729796
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| | |||| || | ||||||||||| |||||||||| | ||||| ||||||| |
|
|
| T |
26729892 |
gtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcatatctgttcatgtccagctagatatgttagta |
26729796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #37
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 27215078 - 27214897
Alignment:
| Q |
34 |
tcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgtactaacaacatcacaatc |
133 |
Q |
| |
|
||||||| ||||||| || ||||||| |||| ||||||||||||||||| || |||||||| ||||||||||||| ||| | |||||||| ||| |
|
|
| T |
27215078 |
tcttgtttgagatgtcttcaactatcttctcaataaacttgtattcatatctgttaatgtccaataagataagttagtgcatac-accaacatcaatatc |
27214980 |
T |
|
| Q |
134 |
acatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataa |
216 |
Q |
| |
|
| ||||||||||| | | | ||||||| | ||||||| ||| ||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
27214979 |
agatccatgtactgagattgtattatataattctaacccttttcacatataaaacacttatacttgtttaaaaacatatataa |
27214897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #38
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 26656599 - 26656514
Alignment:
| Q |
26 |
acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta |
112 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | |||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
26656599 |
acgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatctattcatgtacaa-gagataagttagta |
26656514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #39
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 26762570 - 26762485
Alignment:
| Q |
26 |
acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta |
112 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| | |||| ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
26762570 |
acgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcatatctattcatgtacaa-gagataagttagta |
26762485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #40
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 25482133 - 25482048
Alignment:
| Q |
273 |
gaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
358 |
Q |
| |
|
||||||||||||| || ||||||| | | |||||||||||| |||||| || ||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
25482133 |
gaaataaaatatagaaaggaaaaacaagttttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagc |
25482048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 271 - 333
Target Start/End: Complemental strand, 25511333 - 25511271
Alignment:
| Q |
271 |
aagaaataaaatataaaagggaaaaataggatttaagtaaagttgggtacccaggaggactat |
333 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
25511333 |
aagaaataaaatataaaaaagaaaaacaagatttaagtaaagtagggtacccatgaggactat |
25511271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #42
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 26056290 - 26056232
Alignment:
| Q |
300 |
gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
358 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
26056290 |
gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc |
26056232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #43
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 26076260 - 26076202
Alignment:
| Q |
300 |
gatttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc |
358 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
26076260 |
gatttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagc |
26076202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 25506704 - 25506779
Alignment:
| Q |
178 |
acatataaataactaatacttgtttaaaaacgtata-taagaaaggtatttcccatttaacctttaagatgagatt |
252 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || ||| ||| || ||||| |||||| ||||||||||||||| |
|
|
| T |
25506704 |
acatataaataacttatacttgtttaaaaacttttactaaaaaaagtgtttcctatttaaactttaagatgagatt |
25506779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 26884704 - 26884621
Alignment:
| Q |
26 |
acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagtta |
109 |
Q |
| |
|
||||||||| |||| |||||| | || |||||||| || || |||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26884704 |
acgattgattttgtcggagatatcttcgactatcttcccgataaactcgtattcgtatctattcatgtccaataagataagtta |
26884621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 454
Target Start/End: Complemental strand, 27214769 - 27214630
Alignment:
| Q |
315 |
gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcatttt |
414 |
Q |
| |
|
|||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | ||||| |||||| |||||||| ||||||||||| | | ||||| |
|
|
| T |
27214769 |
gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt |
27214670 |
T |
|
| Q |
415 |
gaaacctcttttcatgctcagccaatgcttcaccataact |
454 |
Q |
| |
|
||||||||| |||||||| ||| | |||||||||||||| |
|
|
| T |
27214669 |
gaaacctctcttcatgcttagcaagcgcttcaccataact |
27214630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 454
Target Start/End: Original strand, 27234459 - 27234598
Alignment:
| Q |
315 |
gggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcatttt |
414 |
Q |
| |
|
|||||| ||| |||||||| ||| ||||| || ||||||||||| ||| | ||||| |||||| |||||||| ||||||||||| | | ||||| |
|
|
| T |
27234459 |
gggtactcagaaggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttatttt |
27234558 |
T |
|
| Q |
415 |
gaaacctcttttcatgctcagccaatgcttcaccataact |
454 |
Q |
| |
|
||||||||| |||||||| ||| | |||||||||||||| |
|
|
| T |
27234559 |
gaaacctctcttcatgcttagcaagcgcttcaccataact |
27234598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #48
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 31284860 - 31284823
Alignment:
| Q |
71 |
cttgtattcatatctattcatgtccaacaagataagtt |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31284860 |
cttgtattcatatctattcatgcccaacaagataagtt |
31284823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 31284535 - 31284494
Alignment:
| Q |
417 |
aacctcttttcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
31284535 |
aacctctcttcatgcttagccaatgcttctccataactacct |
31284494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 28098302 - 28098346
Alignment:
| Q |
410 |
attttgaaacctcttttcatgctcagccaatgcttcaccataact |
454 |
Q |
| |
|
|||||| ||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
28098302 |
attttggaacctctcttcatgcttagctaatgcttcaccataact |
28098346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 173; Significance: 8e-93; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 60213 - 59776
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
60213 |
gtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagtatgt |
60114 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||| || ||| |
|
|
| T |
60113 |
aacaacatca-cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaata |
60015 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttg |
315 |
Q |
| |
|
| |||||| || | |||||| |||||||||| ||||| ||| ||| || || |||| |||| |||| | |||| |||| ||||||||| | |
|
|
| T |
60014 |
aaaaaggtgttacacatttaggctttaagatg---gtattgaggaatagaaattaaataaattaaatgcaaaa-agcaaaacaggaattaagtaaatagg |
59919 |
T |
|
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
||||||| || | ||||||||||| || ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
59918 |
cgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttg |
59819 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
59818 |
aaacctattttcatgctcagccaatgctttaccatacctacct |
59776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 8e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 16 - 458
Target Start/End: Complemental strand, 18074405 - 18073968
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
18074405 |
gtaaggactgtcgactgatcttgttggagatgtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagtatgt |
18074306 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||| || ||| |
|
|
| T |
18074305 |
aacaacatca-cacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaacataaata |
18074207 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttg |
315 |
Q |
| |
|
| |||||| || | |||||| |||||||||| ||||| ||| ||| || || |||| |||| |||| | |||| |||| ||||||||| | |
|
|
| T |
18074206 |
aaaaaggtgttacacatttaggctttaagatg---gtattgaggaatagaaattaaataaattaaatgcaaaa-agcaaaacaggaattaagtaaatagg |
18074111 |
T |
|
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
||||||| || | ||||||||||| || ||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
18074110 |
cgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcgtatcattttg |
18074011 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactacct |
458 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
18074010 |
aaacctattttcatgctcagccaatgctttaccatacctacct |
18073968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 18731038 - 18731418
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
18731038 |
gtaagggctgacgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcatatctattcatgtccaataagataagtcagtatgt |
18731137 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| | | |
|
|
| T |
18731138 |
a---acaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgta-aaa |
18731233 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaagttg |
315 |
Q |
| |
|
| |||||| ||||| ||||| |||||||||| ||||||| ||| || || || ||||||||| |||| || |||| | || |||||||||| | |
|
|
| T |
18731234 |
aaaaaggtgtttccaatttaggctttaagatggtattattgaggaataaaaattaaataaataaaatgcaaaatgg-aaaacaagaattaagtaaagagg |
18731332 |
T |
|
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttc |
404 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||||| | | ||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
18731333 |
agtaccc---atgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttc |
18731418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 18698934 - 18699161
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | ||| || |
|
|
| T |
18698934 |
gtaagggctgacgactgatcttgttggagacgtatttgactatatctccaataaacttgtattcatatctattcatgtccaataagataaatcagtgtg- |
18699032 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
18699033 |
--taacaacatcacagtcacatccatgtcctcatagtatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaacgta-att |
18699129 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
| |||||| ||||| ||||| |||||||||| |
|
|
| T |
18699130 |
aaaaaggtgtttccaatttaggctttaagatg |
18699161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 18723619 - 18723846
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
18723619 |
gtaagggctgacgactgatcttgttgttgacatatttgactatctttccaataaacttgtattcatatctattcatgtccaataagataagtcagtatgt |
18723718 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
18723719 |
a---acaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaata |
18723815 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
| |||||| ||||| ||||| |||||||||| |
|
|
| T |
18723816 |
a-aaaggtgtttccaatttaggctttaagatg |
18723846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 18655011 - 18655238
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| | ||| ||| |
|
|
| T |
18655011 |
gtaagggctgacgactgatcttgttggagacatatttgactatctttccaataaacttgtattcatatctattcatgtccaataagataaatcagtgtgt |
18655110 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatata |
215 |
Q |
| |
|
| ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
18655111 |
a---acaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaata |
18655207 |
T |
|
| Q |
216 |
agaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
| |||||| |||| ||||| |||||||||| |
|
|
| T |
18655208 |
a-aaaggtgtttcgaatttaggctttaagatg |
18655238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 18679094 - 18679316
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||| ||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
18679094 |
gtaagggctgccgactgatcttgttagagacgtatttgactatctctccaataaacttgtattcatatctattcatgtccaataagataagtcagtatg- |
18679192 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttct-------aactatttcgacatataaataactaatacttgtttaaaaac |
208 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
18679193 |
--taacaacatcacagtcacacccatgtactcataatatatcatacatttctaaattcaaactattttgacttataaataactaatacttgtttaaaaac |
18679290 |
T |
|
| Q |
209 |
gtatataagaaaggtatttcccattta |
235 |
Q |
| |
|
||| |||| |||||| ||||| ||||| |
|
|
| T |
18679291 |
gtaaataa-aaaggtgtttccaattta |
18679316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 14195 - 14339
Alignment:
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14195 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttg |
14294 |
T |
|
| Q |
416 |
aaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14295 |
aaacctcttttcatgctcagccaatgcttcaccataactaccttt |
14339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 316 - 460
Target Start/End: Original strand, 3259 - 3404
Alignment:
| Q |
316 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatg-tttttcggatcatttt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
3259 |
ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcatttt |
3358 |
T |
|
| Q |
415 |
gaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3359 |
gaaacctcttttcatgctcagccaatgcttcaccataactaccttt |
3404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 3077 - 3196
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3077 |
gtaagggttgacgactggtcttgttggagatgtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagataagttagtatg- |
3175 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatc |
138 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
3176 |
--tgacaacatcacaatcacatc |
3196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 14082 - 14135
Alignment:
| Q |
87 |
ttcatgtccaacaagataagttagtatgtactaacaacatcacaatcacatccatgt |
143 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
14082 |
ttcatgtccaataagataagttagtatg---tgacaacatcacaatcacatccatgt |
14135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 8131 - 7902
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
8131 |
gtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagtatg- |
8033 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| || ||| | |||||||||||||||||||| || |
|
|
| T |
8032 |
--taacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat |
7935 |
T |
|
| Q |
215 |
aagaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
| ||| || ||||||||||| |||||||||| |
|
|
| T |
7934 |
agaaaaagtgtttcccatttaggctttaagatg |
7902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 458
Target Start/End: Complemental strand, 7854 - 7731
Alignment:
| Q |
335 |
atggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca |
434 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||| | ||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
7854 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca |
7755 |
T |
|
| Q |
435 |
gccaatgcttcaccataactacct |
458 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
7754 |
gccaatgcttcaccataacgacct |
7731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 131; Significance: 9e-68; HSPs: 4)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 13213 - 13442
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
13213 |
gtaagggctgacgactgatcttgttggagatgtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagtatg- |
13311 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtatat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| || ||| | |||||||||||||||||||| || |
|
|
| T |
13312 |
--taacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacgtaaat |
13409 |
T |
|
| Q |
215 |
aagaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
| ||| || ||||||||||| |||||||||| |
|
|
| T |
13410 |
agaaaaagtgtttcccatttaggctttaagatg |
13442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 4250 - 4481
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagtatgt |
115 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
4250 |
gtaagggctgatgactgatcttgttggagatgttcttgactatctctccaataaacttgtattcatatctattaatgtccgataagataagttagtatg- |
4348 |
T |
|
| Q |
116 |
actaacaacatcacaatcacatccatgtactcataatatat--tatacatttctaactatttcgacatataaataact-aatacttgtttaaaaacgtat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||| | |||||||||||||||||||| |
|
|
| T |
4349 |
--taacaacatcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaacgtaa |
4446 |
T |
|
| Q |
213 |
ataagaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
||| |||||| ||||||||||| |||||||||| |
|
|
| T |
4447 |
atataaaaggtgtttcccatttaggctttaagatg |
4481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 335 - 460
Target Start/End: Original strand, 4529 - 4654
Alignment:
| Q |
335 |
atggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca |
434 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
4529 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca |
4628 |
T |
|
| Q |
435 |
gccaatgcttcaccataactaccttt |
460 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4629 |
gccaatgcttcaccataactaccttt |
4654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 458
Target Start/End: Original strand, 13490 - 13613
Alignment:
| Q |
335 |
atggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctca |
434 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||||| ||||| | ||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
13490 |
atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca |
13589 |
T |
|
| Q |
435 |
gccaatgcttcaccataactacct |
458 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
13590 |
gccaatgcttcaccataacgacct |
13613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 267878 - 268094
Alignment:
| Q |
16 |
gtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta--t |
113 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||||| |
|
|
| T |
267878 |
gtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcatatctattcatgtcaaataatgcaagttagtaata |
267977 |
T |
|
| Q |
114 |
gta-ctaacaacat--cacaatcacatc----catgtactcataatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaa |
206 |
Q |
| |
|
||| ||||||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||||| |||||||| ||||||||||| |||| || |
|
|
| T |
267978 |
gtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaa |
268077 |
T |
|
| Q |
207 |
acgtatataagaaaggt |
223 |
Q |
| |
|
||||| |||| |||||| |
|
|
| T |
268078 |
acgtaaataaaaaaggt |
268094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 28164048 - 28164139
Alignment:
| Q |
165 |
tctaactatttcgacatataaataactaatacttgtttaaaaacgtatataagaaaggtatttcccatttaacctttaagatgagattattg |
256 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||||||||||| || |||| || ||||| | |||||| |||||||||||| |||||| |
|
|
| T |
28164048 |
tctaactattttgacatataaatatcttatacttgtttaaaaacataaataaataaaatattttctatttaagctttaagatgaggttattg |
28164139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 358
Target Start/End: Original strand, 28127333 - 28127547
Alignment:
| Q |
150 |
aatatattatacatttctaactatttcgacatataaataactaatacttgtttaaaaacgtatataa--gaaaggtatttcccatttaacctttaagatg |
247 |
Q |
| |
|
|||| |||||||| ||| ||||||| |||||||||||| || |||||||||||||||| || |||| ||| | ||| | |||||| |||||||||| |
|
|
| T |
28127333 |
aatacattatacaactctgactattttgacatataaataccttatacttgtttaaaaacataaataaataaaaaatgttttctatttaagctttaagatg |
28127432 |
T |
|
| Q |
248 |
agattattgtaaaattgaagttgaagaaataaaatataaa-ag------ggaaaaataggatttaagtaaagttgggtacccaggaggactatcatggta |
340 |
Q |
| |
|
|| |||||| ||| ||| || |||||| |||||||||| || || |||| | |||||||||| ||| |||||||| ||||||| |||||| |
|
|
| T |
28127433 |
aggttattggttaatagaaattaaagaaagaaaatataaagaggcaagaggcaaaacaagatttaagtatagtagggtaccc---tggactataatggta |
28127529 |
T |
|
| Q |
341 |
gccggacaagttagcagc |
358 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
28127530 |
gccggacaagttagcagc |
28127547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 28127223 - 28127308
Alignment:
| Q |
26 |
acgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagt |
111 |
Q |
| |
|
|||||||||| ||| ||| |||| ||||| ||||| ||| |||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
28127223 |
acgattgatcctgtcggatatgtctttgattatcttctgaataaacttgtattcatatctattaatctccaataagataagttagt |
28127308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 29273391 - 29273472
Alignment:
| Q |
31 |
tgatcttgttggagatgtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || | ||||||||| |
|
|
| T |
29273391 |
tgatcttgttggagatgtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta |
29273472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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