View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21105_low_9 (Length: 306)

Name: NF21105_low_9
Description: NF21105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21105_low_9
NF21105_low_9
[»] chr8 (1 HSPs)
chr8 (7-302)||(7417221-7417516)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 7417516 - 7417221
Alignment:
Q  7 atacatgcccgatcaccaagaaacatgtgtattgatggaaagtttgttgaacctcatgtgggtcctcgagctattgctttctcactatcacatgcatata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417516 atacatgcccgatcaccaagaaacatgtgtattgatggaaagtttgttgaacctcatgtgggtcctcgagctattgctttctcactatcacatgcatata 7417417  T
Q  107 taaataatgacccacacacacccttcaaactcactcacacaaccctct--aatttcacaccaaaagaaagtcacaaaatcgaccaattatggcgccagtg 204  Q
      ||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7417416 --aataatgacccacacacacccttcaaactcactcacataaccctctctaatttcacaccaaaagaaagtcacaaaatcgaccaattatggagccagtg 7417319  T
Q  205 caattattggaacttcctagttgggtcacattgtttgcaacatttgtcatcctcctcctcttcagccgccgcctccgccgccacaaatacaatctacc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417318 caattattggaacttcctagttgggtcacattgtttgcaacatttgtcatcctcctcctcttcagccgccgcctccgccgccacaaatacaatctacc 7417221  T

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