View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21106_high_14 (Length: 322)

Name: NF21106_high_14
Description: NF21106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21106_high_14
NF21106_high_14
[»] chr4 (1 HSPs)
chr4 (21-313)||(49175491-49175783)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 49175491 - 49175783
Alignment:
Q  21 acatcatcatatatcttcattgcttcattgaactgtttcaggtcttcatcagtgacaagtcgagaaggaaggggaggaataacatccgagccatcagctg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49175491 acatcatcatatatcttcattgcttcattgaactgtttcaggtcttcatcagtgacaagtcgagaaggaaggggaggaataacatccgagccatcagctg 49175590  T
Q  121 aatgccctaggaccaaattcttccatgtagtctggaacataatttttggggagctccagtaagattctcttcagaaacagcaagtaaaaagatatattta 220  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49175591 aatgccctaggaccaaattcttccatgtagcctggaacataatttttggggagctccagtaagattctcttcagaaacagcaagtaaaaagatatattta 49175690  T
Q  221 cgtggttgaaaagcccaaccaaatattaaatagcataccagctcactttccttcctgtttctgtcaacagcctcaaacacatctaactctgct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49175691 cgtggttgaaaagcccaaccaaatattaaatagcataccagctcactttccttcctgtttctgtcaacagcctcaaacacatctaactctgct 49175783  T

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