View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21106_high_16 (Length: 309)
Name: NF21106_high_16
Description: NF21106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21106_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 297
Target Start/End: Complemental strand, 1702627 - 1702359
Alignment:
| Q |
30 |
gaataataggatggctaaggtgttgaataataagaggatgatgagaaggaaagtgcttgttagtgtttgagtttgaatttaaaatagaagacgtggacga |
129 |
Q |
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| T |
1702627 |
gaataataggatggttaaggtgttgaataataagaggatgatgagaaggaaagtgtttgctagtgtttgagtttgaatttaaaatagaagacgtggacga |
1702528 |
T |
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| Q |
130 |
ggcataaagattcaataaaattg-aaagagtgactcatgaaaggtgacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggca |
228 |
Q |
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| T |
1702527 |
ggcataaagattcaataaaaatggaaagagtgactcatgaaaggtgacgtgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggca |
1702428 |
T |
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| Q |
229 |
tgatgttgtgtagaatagccaaagaaaacacatggcatgcttcgattggataacttattttgagagtat |
297 |
Q |
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| T |
1702427 |
tgatgttgtgtagagtagccaaagaaaacacatggcatgcttcgattggataacttattttgagagtat |
1702359 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 26591960 - 26592018
Alignment:
| Q |
178 |
tgtcttgagagatacaacttttgagtgggtgggtgataacattggtaggcatgatgttg |
236 |
Q |
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| T |
26591960 |
tgtctggagagatataatttttgagtgggaggatggtagcattggtaggcatgatgttg |
26592018 |
T |
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