View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21106_high_3 (Length: 636)

Name: NF21106_high_3
Description: NF21106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21106_high_3
NF21106_high_3
[»] chr3 (5 HSPs)
chr3 (26-358)||(50211440-50211772)
chr3 (319-360)||(21691047-21691088)
chr3 (305-348)||(23091332-23091375)
chr3 (319-358)||(49391763-49391802)
chr3 (304-355)||(42904838-42904889)
[»] chr7 (4 HSPs)
chr7 (359-636)||(20706781-20707073)
chr7 (359-636)||(20874825-20875117)
chr7 (319-358)||(11612746-11612785)
chr7 (304-338)||(45268699-45268733)
[»] chr8 (6 HSPs)
chr8 (285-361)||(174226-174302)
chr8 (286-358)||(28964476-28964548)
chr8 (318-359)||(42422859-42422900)
chr8 (304-348)||(41524725-41524769)
chr8 (313-348)||(16089164-16089199)
chr8 (304-348)||(27678569-27678613)
[»] chr5 (5 HSPs)
chr5 (269-348)||(6752716-6752795)
chr5 (304-355)||(27183647-27183698)
chr5 (285-340)||(33100954-33101009)
chr5 (288-322)||(27259351-27259385)
chr5 (304-340)||(28004951-28004987)
[»] chr6 (7 HSPs)
chr6 (285-358)||(14904019-14904092)
chr6 (282-355)||(13833340-13833413)
chr6 (319-354)||(16970655-16970690)
chr6 (304-359)||(26602785-26602840)
chr6 (304-358)||(34251075-34251129)
chr6 (319-355)||(6127145-6127181)
chr6 (304-344)||(21528113-21528153)
[»] scaffold0060 (1 HSPs)
scaffold0060 (285-348)||(29385-29448)
[»] chr2 (6 HSPs)
chr2 (269-348)||(39843909-39843988)
chr2 (298-358)||(41927311-41927371)
chr2 (318-360)||(15720240-15720282)
chr2 (304-350)||(37166210-37166256)
chr2 (304-344)||(7502174-7502214)
chr2 (304-348)||(37314237-37314281)
[»] chr4 (4 HSPs)
chr4 (268-348)||(33727992-33728072)
chr4 (299-350)||(2383300-2383351)
chr4 (309-355)||(7501080-7501126)
chr4 (299-343)||(44352824-44352868)
[»] chr1 (4 HSPs)
chr1 (288-343)||(20028699-20028754)
chr1 (286-358)||(41307368-41307440)
chr1 (322-358)||(51353887-51353923)
chr1 (304-348)||(22200531-22200575)
[»] scaffold0062 (1 HSPs)
scaffold0062 (318-360)||(68797-68839)
[»] scaffold0369 (1 HSPs)
scaffold0369 (304-336)||(11987-12019)
[»] scaffold0001 (1 HSPs)
scaffold0001 (318-358)||(420360-420400)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 26 - 358
Target Start/End: Original strand, 50211440 - 50211772
Alignment:
Q  26 atcaattaaacctgagctgcttctttcatcttttctttctcctctagagccgcacttaccctctgcttctgttctcacttttctaaaccaaaatccaccc 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50211440 atcaattaaacctgagctgcttctttcatcttttctttctcctctagagccgcacttaccctctgcttctgttctcacttttctaaaccaaaatccaccc 50211539  T
Q  126 atggaatcgatgcnnnnnnnnnnnnnnnnngcaggatatgctaaatacggtccaacccatggaatcggatgaaccagcggttttaccggttatttccggt 225  Q
    |||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50211540 atggaatcgatgcttttttgtcatttttttgcaggatatgctaaatacggtccaacccatggaatcggatgaaccggcggttttaccggttatttccggt 50211639  T
Q  226 ttccgcccggttctccggtttataccccggttctatatgaggacggtttttatggccagtcggaccggacacaggtctggttcccggtccaaccggttga 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  50211640 ttccgcccggttctccggtttataccccggttctatatgaggacggtttttacggccagtcggaccggacacaggtccggttcccggttcaaccggttga 50211739  T
Q  326 accggccggtccggtccggttttaattaccttg 358  Q
    |||||||||||||||||||||||||||||||||    
T  50211740 accggccggtccggtccggttttaattaccttg 50211772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 21691047 - 21691088
Alignment:
Q  319 cggttgaaccggccggtccggtccggttttaattaccttgct 360  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  21691047 cggttgaaccggccggtccggtccggttttaatcaccttgct 21691088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 23091375 - 23091332
Alignment:
Q  305 gttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  23091375 gttcccggttcaaccgattgaaccggccggtccggtccggtttt 23091332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 49391763 - 49391802
Alignment:
Q  319 cggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  49391763 cggttgaaccggccggtccggtccgattttaattaccttg 49391802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 42904838 - 42904889
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggttttaattacc 355  Q
    ||||| || ||||||||||||||||| |||||||||| ||||||| ||||||    
T  42904838 ggttctcgatccaaccggttgaaccgaccggtccggttcggtttttattacc 42904889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 359 - 636
Target Start/End: Original strand, 20706781 - 20707073
Alignment:
Q  359 ctactaccactaaaataaaatctaactacaacaaaattccataattatccttgtttaaattgataaccttattgattttaccctttgtgggcgcctcttt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20706781 ctactaccactaaaataaaatctaactacaacaaaattccataattatccttgtttaaattgataaccttattgattttaccctttgtgggcgcctcttt 20706880  T
Q  459 accctatatggggaaatgcttaccc-------------------attcagggcgcaatgttgtattttattggtgatccattaaatcttcgctcttcaca 539  Q
    |||||||||||||||||| ||||||                   ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  20706881 accctatatggggaaatgtttacccattgagaacgcaattacctattgagggcgcaatgttgtcttttgttggtgatccattaaatcttcgctcttcacg 20706980  T
Q  540 ttgaaattttgatcattataagttctcatctctgtttctaattcttgcactatccttaacggaaaacgcatgattaacttgatactttggttagtta 636  Q
    |||||||||| |||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20706981 ttgaaatttttatcattatgagttctcatctctg----taattcttgcactatccttaacggaaaacgcatgattaacttgatacttttgttagtta 20707073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 359 - 636
Target Start/End: Original strand, 20874825 - 20875117
Alignment:
Q  359 ctactaccactaaaataaaatctaactacaacaaaattccataattatccttgtttaaattgataaccttattgattttaccctttgtgggcgcctcttt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20874825 ctactaccactaaaataaaatctaactacaacaaaattccataattatccttgtttaaattgataaccttattgattttaccctttgtgggcgcctcttt 20874924  T
Q  459 accctatatggggaaatgcttaccc-------------------attcagggcgcaatgttgtattttattggtgatccattaaatcttcgctcttcaca 539  Q
    |||||||||||||||||| ||||||                   ||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  20874925 accctatatggggaaatgtttacccattgagaacgcaattacctattgagggcgcaatgttgtcttttgttggtgatccattaaatcttcgctcttcacg 20875024  T
Q  540 ttgaaattttgatcattataagttctcatctctgtttctaattcttgcactatccttaacggaaaacgcatgattaacttgatactttggttagtta 636  Q
    |||||||||| |||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20875025 ttgaaatttttatcattatgagttctcatctctg----taattcttgcactatccttaacggaaaacgcatgattaacttgatacttttgttagtta 20875117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 358
Target Start/End: Original strand, 11612746 - 11612785
Alignment:
Q  319 cggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  11612746 cggttgaaccggccggtccggtccggtttttaataccttg 11612785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 45268733 - 45268699
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccg 338  Q
    |||||||||| ||||||||||||||||||||||||    
T  45268733 ggttcccggttcaaccggttgaaccggccggtccg 45268699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 174302 - 174226
Alignment:
Q  285 tcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttgcta 361  Q
    |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||    
T  174302 tcggaccgaacataggtccggttcccggtccaaccggttgaaccggccggtccggtccggttttgacaaccttgcta 174226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 28964548 - 28964476
Alignment:
Q  286 cggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    ||||||||| | ||||| |||||||| | |||||||||| ||||||||||||||||||||||| |||||||||    
T  28964548 cggaccggagataggtccggttcccgattcaaccggttggaccggccggtccggtccggtttttattaccttg 28964476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 42422900 - 42422859
Alignment:
Q  318 ccggttgaaccggccggtccggtccggttttaattaccttgc 359  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  42422900 ccggttgaaccggccagtcctgtccggttttaattaccttgc 42422859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 41524769 - 41524725
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||    
T  41524769 ggttcccggttcaatcggttcaaccggccggtccggtccggtttt 41524725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 348
Target Start/End: Original strand, 16089164 - 16089199
Alignment:
Q  313 tccaaccggttgaaccggccggtccggtccggtttt 348  Q
    ||||||||||||||||||| ||||||||||||||||    
T  16089164 tccaaccggttgaaccggctggtccggtccggtttt 16089199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 27678613 - 27678569
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||    
T  27678613 ggttcctggtcggaccggttcaaccggccggtccggtccggtttt 27678569  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 269 - 348
Target Start/End: Complemental strand, 6752795 - 6752716
Alignment:
Q  269 cggtttttatggccagtcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    ||||||||| ||||| ||||||||| ||  | || |||||||||| ||||||||||||||||||||||||||||||||||    
T  6752795 cggtttttagggccactcggaccggtcagtgttccggttcccggttcaaccggttgaaccggccggtccggtccggtttt 6752716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 27183698 - 27183647
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggttttaattacc 355  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27183698 ggttcccggttcaatcggttgaaccggccggtccggtccggttttaattacc 27183647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 33101009 - 33100954
Alignment:
Q  285 tcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggt 340  Q
    |||||||||||| ||||| |||||| ||||||| ||||||||| ||||||||||||    
T  33101009 tcggaccggacataggtccggttcctggtccaatcggttgaactggccggtccggt 33100954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 27259351 - 27259385
Alignment:
Q  288 gaccggacacaggtctggttcccggtccaaccggt 322  Q
    ||||||||||||||||||||| |||||||||||||    
T  27259351 gaccggacacaggtctggttcacggtccaaccggt 27259385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 28004951 - 28004987
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggt 340  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  28004951 ggttcccggtccaaccgattgaaccggacggtccggt 28004987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 285 - 358
Target Start/End: Complemental strand, 14904092 - 14904019
Alignment:
Q  285 tcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    |||||||| |||| | || ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  14904092 tcggaccgaacactgatccggttcacggtccaaccggttgaaccggtcggtccggtccggttttcattaccttg 14904019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 13833340 - 13833413
Alignment:
Q  282 cagtcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaattacc 355  Q
    |||||||||||||||  |||| ||||| |||| ||| ||||||||||||||||||||||||| |||||| ||||    
T  13833340 cagtcggaccggacatgggtccggttctcggttcaatcggttgaaccggccggtccggtccgtttttaactacc 13833413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 354
Target Start/End: Complemental strand, 16970690 - 16970655
Alignment:
Q  319 cggttgaaccggccggtccggtccggttttaattac 354  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16970690 cggttgaaccggccggttcggtccggttttaattac 16970655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 359
Target Start/End: Complemental strand, 26602840 - 26602785
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttgc 359  Q
    |||||||||| |||||| | | |||||||||| ||||||||||||||| |||||||    
T  26602840 ggttcccggttcaaccgatcggaccggccggttcggtccggttttaatcaccttgc 26602785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 34251129 - 34251075
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    ||||| |||| |||||||| ||||||| ||||||||||||||||| || ||||||    
T  34251129 ggttcacggttcaaccggtcgaaccggacggtccggtccggttttgataaccttg 34251075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 6127145 - 6127181
Alignment:
Q  319 cggttgaaccggccggtccggtccggttttaattacc 355  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  6127145 cggttgaaccggccggtccgatccggttttaactacc 6127181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 21528153 - 21528113
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccgg 344  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  21528153 ggttcctggtcggaccggttgaaccggccggtccggtccgg 21528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 29385 - 29448
Alignment:
Q  285 tcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    |||||||| ||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||    
T  29385 tcggaccgaacataggtccggttcctggtccaaccggttgtaccggccggtccggtccggtttt 29448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 39843909 - 39843988
Alignment:
Q  269 cggtttttatggccagtcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    ||||||||| || || ||||||||| ||  | || |||||||||| |||||| |||||||||||||||||||||||||||    
T  39843909 cggtttttagggtcactcggaccggtcagtgttccggttcccggttcaaccgattgaaccggccggtccggtccggtttt 39843988  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 41927371 - 41927311
Alignment:
Q  298 aggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    |||| |||||| ||| ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  41927371 aggtttggttcgcggcccaactggttgaaccggccagtccggtccagttttaattaccttg 41927311  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 15720282 - 15720240
Alignment:
Q  318 ccggttgaaccggccggtccggtccggttttaattaccttgct 360  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  15720282 ccggttgaaccggccggtccggtccggtttttactaccttgct 15720240  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 37166210 - 37166256
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggttttaa 350  Q
    ||||| ||| |||||| |||||||||| |||||||||||||||||||    
T  37166210 ggttcacggcccaaccagttgaaccggacggtccggtccggttttaa 37166256  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 344
Target Start/End: Original strand, 7502174 - 7502214
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccgg 344  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  7502174 ggttcctggtcggaccggttgaaccggccggtccggtccgg 7502214  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 37314281 - 37314237
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||    
T  37314281 ggttcctggtcggaccggttcaaccggccggtccggtccggtttt 37314237  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 33728072 - 33727992
Alignment:
Q  268 acggtttttatggccagtcggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    |||||||||| || || |||||||||| |||   | ||||| |||| |||||||||||||||||||||||||| |||||||    
T  33728072 acggtttttaaggtcaatcggaccggaaacaataccggttcacggttcaaccggttgaaccggccggtccggttcggtttt 33727992  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 2383351 - 2383300
Alignment:
Q  299 ggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaa 350  Q
    |||| ||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  2383351 ggtccggttcacggttcaaccggttgaaccggccggtccagtccggttttaa 2383300  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 7501126 - 7501080
Alignment:
Q  309 ccggtccaaccggttgaaccggccggtccggtccggttttaattacc 355  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| ||||    
T  7501126 ccggttcaatcggttgaaccggccggtccggttcggttttaactacc 7501080  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 299 - 343
Target Start/End: Original strand, 44352824 - 44352868
Alignment:
Q  299 ggtctggttcccggtccaaccggttgaaccggccggtccggtccg 343  Q
    |||| ||||| |||| |||||||| ||||||||||||||||||||    
T  44352824 ggtccggttcacggttcaaccggtcgaaccggccggtccggtccg 44352868  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 20028699 - 20028754
Alignment:
Q  288 gaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccg 343  Q
    ||||||| ||||||| |||||||||||||||| ||||||| || ||||||||||||    
T  20028699 gaccggatacaggtccggttcccggtccaaccagttgaactggacggtccggtccg 20028754  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 41307368 - 41307440
Alignment:
Q  286 cggaccggacacaggtctggttcccggtccaaccggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    ||||||||||  | ||| ||||||||||  ||||||| | ||||||||||| |||||||||||||| ||||||    
T  41307368 cggaccggactgatgtccggttcccggttgaaccggtcggaccggccggtctggtccggttttaataaccttg 41307440  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 51353887 - 51353923
Alignment:
Q  322 ttgaaccggccggtccggtccggttttaattaccttg 358  Q
    ||||||||||||||||||||||||||||||| |||||    
T  51353887 ttgaaccggccggtccggtccggttttaatttccttg 51353923  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 22200575 - 22200531
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtccggtccggtttt 348  Q
    ||||||||||| ||||||||||||| |||||||  ||||||||||    
T  22200575 ggttcccggtcaaaccggttgaacctgccggtcttgtccggtttt 22200531  T

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Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 68839 - 68797
Alignment:
Q  318 ccggttgaaccggccggtccggtccggttttaattaccttgct 360  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  68839 ccggttgaaccggccggtccggtccggtttttactaccttgct 68797  T

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Target: scaffold0369 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 304 - 336
Target Start/End: Complemental strand, 12019 - 11987
Alignment:
Q  304 ggttcccggtccaaccggttgaaccggccggtc 336  Q
    |||||||||||||||||||||||||||||||||    
T  12019 ggttcccggtccaaccggttgaaccggccggtc 11987  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 420360 - 420400
Alignment:
Q  318 ccggttgaaccggccggtccggtccggttttaattaccttg 358  Q
    ||||||||||||| |||||  ||||||||||||||||||||    
T  420360 ccggttgaaccggtcggtctagtccggttttaattaccttg 420400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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