View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21106_high_6 (Length: 449)
Name: NF21106_high_6
Description: NF21106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21106_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 424
Target Start/End: Complemental strand, 53478827 - 53478433
Alignment:
| Q |
29 |
ataaccaactcattcaacatttttattaataacacaaacacataatcatctattgaagttgaattggtgcaccacattgccaaggtttcaatctatcgaa |
128 |
Q |
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| T |
53478827 |
ataaccaactcattcaacatttttattaataacacaaacacataatcatctattgaagttgaattggtgcaccacattgccaaggtttcaatctatcgaa |
53478728 |
T |
|
| Q |
129 |
agtgtatatgtgttgggcacccttatgctacgagctagctttaggagtaaaacctaacctcatttaatatggtatccaagacatattaaggatgactctn |
228 |
Q |
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| T |
53478727 |
agtgtatatgtgttgggtacccttatgctacgagctagctttaggagtaaaacctaacctcatttaatatgttatccaagacatattaaggatgact-ac |
53478629 |
T |
|
| Q |
229 |
nnnnnnnnnnnnngacatattaaggatgacaatgttgaaattggacatatgatccatgctaaacatgatgatgtccatctcattgtgctgcagtcacaca |
328 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||| || ||||||||| |
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| T |
53478628 |
taaaaaaaaaaaagacatgttaaggatgacaatgttgaaattggacatatgatccatgctaaacatgagggtgatagtgaagttgcactagagtcacaca |
53478529 |
T |
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| Q |
329 |
ctgctaaggttcgtagctgtttaatgtatattggtcaccatcatcctttgagaagtgggattcaaatccatttaatatcatcaattacttcatgat |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478528 |
ctgctaaggttcgtagctgtttaatgtatattggtcaccatcatcctttgagaagtgggattcaaatccatttaatatcatcaattacttcatgat |
53478433 |
T |
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