View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21106_high_7 (Length: 429)
Name: NF21106_high_7
Description: NF21106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21106_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 20707570 - 20707189
Alignment:
| Q |
29 |
aaaaatgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagaca |
128 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20707570 |
aaaaatgcagcatccgttgaaggtaaatattctagccatgaaagaaatatgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagaca |
20707471 |
T |
|
| Q |
129 |
aaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacg |
228 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |
|
|
| T |
20707470 |
aaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat-aacatgatttagtggatatgtccatatttgggaacg |
20707372 |
T |
|
| Q |
229 |
ctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggag---ttatc |
325 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
20707371 |
ctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaagagttattatc |
20707272 |
T |
|
| Q |
326 |
tcttcttcaattcttggtacttcaacaggttaagcgccatctgttatcttttgctacttcttcaaataaaacgggttctctgc |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
20707271 |
tcttcttgaattcttggtacttcaacaggttatgcgccatctgttatcttttccttcttcttcaaataaaatgggttctctgc |
20707189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 29 - 408
Target Start/End: Complemental strand, 20875614 - 20875233
Alignment:
| Q |
29 |
aaaaatgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagaca |
128 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20875614 |
aaaaatgcagcatccgttgaaggtaaatattctagccatgaaagaaatatgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagaca |
20875515 |
T |
|
| Q |
129 |
aaggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacg |
228 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||| |
|
|
| T |
20875514 |
aaagatattcttctatacatatttaatatgaaccccaattcgaataagctcttcgtattttat-aacatgatttagtggatatgtccatatttgggaacg |
20875416 |
T |
|
| Q |
229 |
ctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggag---ttatc |
325 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
20875415 |
ctttccaggatcacgttttaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaagagttattatc |
20875316 |
T |
|
| Q |
326 |
tcttcttcaattcttggtacttcaacaggttaagcgccatctgttatcttttgctacttcttcaaataaaacgggttctctgc |
408 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
20875315 |
tcttcttgaattcttggtacttcaacaggttatgcgccatctgttatcttttccttcttcttcaaataaaatgggttctctgc |
20875233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 41594746 - 41594420
Alignment:
| Q |
30 |
aaaatgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaa |
129 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | || ||||||||| |
|
|
| T |
41594746 |
aaaatgcggcatcctttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatctcctgtaccagacaa |
41594647 |
T |
|
| Q |
130 |
aggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacgc |
229 |
Q |
| |
|
|||||||||||||| || | || ||||| ||||||||||| ||||||||||||||||| ||| | ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
41594646 |
aggatattcttctaaatggatttgatatggaccccaattcagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgc |
41594547 |
T |
|
| Q |
230 |
tttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctctt |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| | |||| | |||| ||||| || ||||||| |||| |
|
|
| T |
41594546 |
tttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaacatcaacaggttgagtcatatgagttatgtctt |
41594447 |
T |
|
| Q |
330 |
cttcaattcttggtacttcaacaggtt |
356 |
Q |
| |
|
||||||||||||| |||| || ||||| |
|
|
| T |
41594446 |
cttcaattcttggaactttaataggtt |
41594420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 43523353 - 43523027
Alignment:
| Q |
30 |
aaaatgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaa |
129 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| ||||| | |||||||||| |||| ||||||||||||||| | || ||||||||| |
|
|
| T |
43523353 |
aaaatgcggcatcctttgaaggtgaatattctagccatgaatgaaataagttaaaccaagtatctttaaaccgtcttggatgatctcctgtaccagacaa |
43523254 |
T |
|
| Q |
130 |
aggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacgc |
229 |
Q |
| |
|
|||||||||||||| || | || ||||| ||||||||||||||||||||||||||||| ||| | ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
43523253 |
aggatattcttctaaatggatttgatatggaccccaattcaaataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgc |
43523154 |
T |
|
| Q |
230 |
tttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctctt |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| | |||| | |||| ||||| || ||||||| |||| |
|
|
| T |
43523153 |
tttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaacatcaacaggttgagtcatatgagttatgtctt |
43523054 |
T |
|
| Q |
330 |
cttcaattcttggtacttcaacaggtt |
356 |
Q |
| |
|
||||||||||||| |||| || ||||| |
|
|
| T |
43523053 |
cttcaattcttggaactttaataggtt |
43523027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 256
Target Start/End: Complemental strand, 5086695 - 5086489
Alignment:
| Q |
50 |
ggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttctatatata |
149 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||| |||||||||| ||||| | ||||| | |
|
|
| T |
5086695 |
ggtgaatattctagccatgaaggaaacaagctgaaccaagtgtcttgaaaccgccttggatgtttctgctcaccagacaagggatagttttctaatttcg |
5086596 |
T |
|
| Q |
150 |
attaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaa |
249 |
Q |
| |
|
|| ||| | |||||| || | ||| |||||||||||| ||| |||||| ||||||||| ||| ||| | ||||||| |||||||||||||||| |
|
|
| T |
5086595 |
tttgataaggaccccattttagatacgctcttcgtattgcatccttttgattcggtggatattgccaaattggaatacgcttttcaggatcacgttctaa |
5086496 |
T |
|
| Q |
250 |
agtattc |
256 |
Q |
| |
|
|| |||| |
|
|
| T |
5086495 |
agaattc |
5086489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 44 - 356
Target Start/End: Original strand, 22511700 - 22512012
Alignment:
| Q |
44 |
tttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaaaggatattcttcta |
143 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | | || |||||||||| |||||||||||| |
|
|
| T |
22511700 |
tttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatcccctttaccagacaaatgatattcttcta |
22511799 |
T |
|
| Q |
144 |
tatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacgctttccaggatcacg |
243 |
Q |
| |
|
|| | || |||| ||||||||| | ||||||||||| ||||| ||| | ||||||| |||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
22511800 |
aatggatttgatatagaccccaatttagataagctcttcatatttcatccacatgatttgctggaaatgtccatattggggaacgctttccaggatcacg |
22511899 |
T |
|
| Q |
244 |
ttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctcttcttcaattcttggt |
343 |
Q |
| |
|
|||||||| ||||| ||||| | | |||||||| ||||||||||| | | || | |||| ||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
22511900 |
ttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgtacatcaacaggttgagttgtatgagttatgtcttcttcaattcttgga |
22511999 |
T |
|
| Q |
344 |
acttcaacaggtt |
356 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
22512000 |
acatcaacaggtt |
22512012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 23123098 - 23123424
Alignment:
| Q |
30 |
aaaatgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaa |
129 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| | | || ||||||| | |
|
|
| T |
23123098 |
aaaatgcggcatcctttgaaggtgaatattctagccatgaataaaacaagctaaaccaagtgtctttaaaccgtcttggatgatcccctttaccagacga |
23123197 |
T |
|
| Q |
130 |
aggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacgc |
229 |
Q |
| |
|
|||||||||||||| || | || ||||| ||||||||||| ||||||||||||||||| ||| | ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
23123198 |
aggatattcttctaaatggatttgatatggaccccaattcagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgc |
23123297 |
T |
|
| Q |
230 |
tttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctctt |
329 |
Q |
| |
|
||| || |||||||||||||| ||||| ||||| | | |||||||| |||||||||| | |||| | |||| ||||| |||| ||||||| |||| |
|
|
| T |
23123298 |
ttttcaagatcacgttctaaataattcaaaaaatcacccgcgttatgcaattcttcaattttttgaacatcaacatgttgagttgtatgagttatgtctt |
23123397 |
T |
|
| Q |
330 |
cttcaattcttggtacttcaacaggtt |
356 |
Q |
| |
|
||||||||||||| || |||||||||| |
|
|
| T |
23123398 |
cttcaattcttggaacatcaacaggtt |
23123424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 30 - 356
Target Start/End: Complemental strand, 14007597 - 14007281
Alignment:
| Q |
30 |
aaaatgcagcaccctttgaaggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctctccaccagacaa |
129 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | || ||||||||| |
|
|
| T |
14007597 |
aaaatgcggcatcctttgaaggtgaatattctagccatgaatgaaataagctaaaccaagtgtctttaaaccgtcttggatgatctcctgtaccagacaa |
14007498 |
T |
|
| Q |
130 |
aggatattcttctatatataattaatatgaaccccaattcaaataagctcttcgtattttatcagcttgatttggtggatatgtccatatttgggaacgc |
229 |
Q |
| |
|
||||||||||| || ||||| ||||||||| | ||||||||||||||||| ||| | ||||||| |||| ||||||||||| |||||||| |
|
|
| T |
14007497 |
aggatattctt----------ttgatatggaccccaatttagataagctcttcgtatttcatccacatgatttgctggaaatgtccatattggggaacgc |
14007408 |
T |
|
| Q |
230 |
tttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaacttgaacaagttgatgtgtaggagttatctctt |
329 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| | |||| | |||| ||||| || ||||||| |||| |
|
|
| T |
14007407 |
tttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaacatcaacaggttgagtcatatgagttatgtctt |
14007308 |
T |
|
| Q |
330 |
cttcaattcttggtacttcaacaggtt |
356 |
Q |
| |
|
||||||||||||| |||| || ||||| |
|
|
| T |
14007307 |
cttcaattcttggaactttaataggtt |
14007281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 7348399 - 7348331
Alignment:
| Q |
50 |
ggtgaatattctagccatgaaagaaatttgctaaaccaagtgtcttgaaaccgtcttggatgtttctct |
118 |
Q |
| |
|
||||||||||||||||| || |||| ||| ||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
7348399 |
ggtgaatattctagccacaaaggaaacatgccaaaccaagtgtgttgaaaccaccttggatgattctct |
7348331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 341
Target Start/End: Original strand, 12869196 - 12869340
Alignment:
| Q |
197 |
tgatttggtggatatgtccatatttgggaacgctttccaggatcacgttctaaagtattcacaaaataagcttggttatgcacttcttcaattcctagaa |
296 |
Q |
| |
|
||||||| |||| |||||| |||| |||||||||||||||||||||||||||||| ||||| ||||| | | |||||||| ||||||||||| | ||| |
|
|
| T |
12869196 |
tgatttgctggaaatgtccgtattggggaacgctttccaggatcacgttctaaagaattcaaaaaatcacccgcgttatgcaattcttcaattctttgaa |
12869295 |
T |
|
| Q |
297 |
cttgaacaagttgatgtgtaggagttatctcttcttcaattcttg |
341 |
Q |
| |
|
| | |||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
12869296 |
catcaacaggttgagtcatatgagttatgtcttcttcaattcttg |
12869340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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