View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21106_high_9 (Length: 346)

Name: NF21106_high_9
Description: NF21106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21106_high_9
NF21106_high_9
[»] chr7 (12 HSPs)
chr7 (162-321)||(36221990-36222144)
chr7 (162-319)||(36217999-36218151)
chr7 (168-319)||(35938858-35939004)
chr7 (32-97)||(36221861-36221926)
chr7 (188-319)||(32727098-32727224)
chr7 (171-319)||(35976975-35977118)
chr7 (171-319)||(35998387-35998530)
chr7 (188-319)||(35946312-35946438)
chr7 (171-319)||(35951951-35952094)
chr7 (168-300)||(35981560-35981687)
chr7 (168-300)||(36002972-36003099)
chr7 (32-96)||(36217870-36217934)
[»] chr1 (2 HSPs)
chr1 (171-318)||(18125241-18125383)
chr1 (247-319)||(18117587-18117659)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 36221990 - 36222144
Alignment:
Q  162 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 261  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  262 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 36222144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 162 - 319
Target Start/End: Original strand, 36217999 - 36218151
Alignment:
Q  162 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagat 261  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  262 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 319  Q
     ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgat 36218151  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 35939004 - 35938858
Alignment:
Q  168 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 267  Q
    |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||  ||| ||||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  268 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 319  Q
     |||||||| ||| ||  |||||||||||||||| |||||||||||||||||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgat 35938858  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 36221861 - 36221926
Alignment:
Q  32 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcattt 97  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221861 ccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggcattt 36221926  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 32727224 - 32727098
Alignment:
Q  188 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 287  Q
    ||||||| |||||||  |||||||||||| ||||||||||     ||||||||||| || |||||   |||||| ||||| |||||||| ||||||| ||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatg 32727130  T
Q  288 atattttacctgcattaaaattaagctatgat 319  Q
    |||||||||||||||| || ||||||||||||    
T  32727129 atattttacctgcattgaagttaagctatgat 32727098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 35977118 - 35976975
Alignment:
Q  171 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 270  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  271 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 319  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35976975  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 35998530 - 35998387
Alignment:
Q  171 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 270  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  271 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 319  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35998387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 35946438 - 35946312
Alignment:
Q  188 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 287  Q
    |||||||| ||||||||| |||||||| |||||| ||| |     ||||||  |||||| || |||  |||||| ||||| |||||||||||||||| ||    
T  35946438 aacattagcaagttctctcttctcaaactttgatataagt-----aagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatg 35946344  T
Q  288 atattttacctgcattaaaattaagctatgat 319  Q
    |||| ||||||||  |||||||||| ||||||    
T  35946343 atatcttacctgcgctaaaattaagttatgat 35946312  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 35952094 - 35951951
Alignment:
Q  171 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 270  Q
    ||||| |||||||| ||| |||| |||||||| || |||||||| || ||||||| |     ||||||  ||| || ||||||  ||  |||||||| ||    
T  35952094 gttccactggctgtgaaatcattgggaagttccctcttctcaaacttcgatttaagt-----aagtgggaatttgtcagagactctgctatttggaattt 35952000  T
Q  271 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 319  Q
    ||||||| |||||| |||||||||||||||  | |||||||||||||||    
T  35951999 agaacaacagaaagatgatattttacctgccctgaaattaagctatgat 35951951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 35981687 - 35981560
Alignment:
Q  168 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 267  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||     |||||||||| |||| ||||| ||   |||| | |||||    
T  35981687 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaa 35981593  T
Q  268 cttagaacaaaagaaaggtgatattttacctgc 300  Q
      |||| || ||||||| |||||||||||||||    
T  35981592 tctagagcagaagaaagatgatattttacctgc 35981560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 300
Target Start/End: Complemental strand, 36003099 - 36002972
Alignment:
Q  168 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaa 267  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||     |||||||||| |||| ||||| ||   |||| | |||||    
T  36003099 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaa 36003005  T
Q  268 cttagaacaaaagaaaggtgatattttacctgc 300  Q
      |||| || ||||||| |||||||||||||||    
T  36003004 tctagagcagaagaaagatgatattttacctgc 36002972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 36217870 - 36217934
Alignment:
Q  32 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 96  Q
    ||||||||| |||||||||||||||||  ||||   | ||||| | |||||||||||||||||||    
T  36217870 ccttcgtatgttttggaaggtctttcgttagaggattgtttgtctctgtttgtgaaatgggcatt 36217934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 18125383 - 18125241
Alignment:
Q  171 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaactt 270  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||||||||||||||||  |     |||||||| ||||||||   |||| | ||||| ||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaattt 18125289  T
Q  271 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatga 318  Q
    | ||||  | |||| |||||||||||||||| ||||||| ||||||||    
T  18125288 aaaacagcaaaaagatgatattttacctgcactaaaattgagctatga 18125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 319
Target Start/End: Complemental strand, 18117659 - 18117587
Alignment:
Q  247 aagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 319  Q
    |||||||  |||||| ||||  |||||||||||| ||  |||||||||||||||| |||||||||||||||||    
T  18117659 aagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagctatgat 18117587  T

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