View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_high_14 (Length: 405)
Name: NF21107_high_14
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 189 - 388
Target Start/End: Complemental strand, 31321087 - 31320887
Alignment:
| Q |
189 |
aattttcattgaatggttcataaatttgtcttaccttcaaggctgaaccagctaaaatgatgtaaccagtatttatcatgaaaagattgatatactgcag |
288 |
Q |
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| T |
31321087 |
aattttgattgaatggttcataaatttgtcttaccttcaaggctgaaccagctaaaatgatgtaaccagtatttatcatgaaaagattgatatactgcag |
31320988 |
T |
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| Q |
289 |
agtccaagtgatagaatatgcctttttgcctacaatt-nnnnnnnnnnnntgaaaattaacataagtagcagtaacaaaataacatgacagataaaaaag |
387 |
Q |
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| T |
31320987 |
agtccaagtgatagaatatgcctttttgcctacaattaaaaaaaaaaaaatgaaaattaacataagtagcagtaacaaaataatatgacagataaaaaag |
31320888 |
T |
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| Q |
388 |
a |
388 |
Q |
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| T |
31320887 |
a |
31320887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 31321338 - 31321162
Alignment:
| Q |
15 |
catcatctcgaaacacggtataagcagcctgcacacagtaatcgtaaaaccggtgtcnnnnnnn-gtcactacaacacaatttataaactaatgagtaca |
113 |
Q |
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| T |
31321338 |
catcatctcgaaacacggtataagcagcctgcacacggtaatcgtaaaaccggtgtcaaaaaaaagtcactacaacacaatttataaactaatgagtaca |
31321239 |
T |
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| Q |
114 |
aactcaattcggtcctttacaattttctcgaagtcttttagtcctttacaaaaaataatactcaaattaatccataa |
190 |
Q |
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| T |
31321238 |
gactcaattcggttctttacaattttctcgcagtcttttagtcctttacaaaaaataatactcaaattaatccataa |
31321162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 324
Target Start/End: Complemental strand, 34976103 - 34975998
Alignment:
| Q |
219 |
ttaccttcaaggctgaaccagctaaaatgatgtaaccagtatttatcatgaaaagattgatatactgcagagtccaagtgatagaatatgcctttttgcc |
318 |
Q |
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|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |||| |||||||| ||| | || |
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| T |
34976103 |
ttaccttcaaagctgaaccagccaaaatgatgaaaccagtatttatcatgaaaagattgacatattgcagagtccatgtgagggaatatgcttttctacc |
34976004 |
T |
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| Q |
319 |
tacaat |
324 |
Q |
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|||||| |
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| T |
34976003 |
tacaat |
34975998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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