View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_high_23 (Length: 315)

Name: NF21107_high_23
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_high_23
NF21107_high_23
[»] chr4 (1 HSPs)
chr4 (1-315)||(24220788-24221095)
[»] chr5 (2 HSPs)
chr5 (86-192)||(32799542-32799648)
chr5 (31-81)||(32799452-32799503)
[»] chr2 (2 HSPs)
chr2 (86-192)||(45337795-45337901)
chr2 (31-81)||(45337705-45337756)
[»] chr7 (2 HSPs)
chr7 (86-290)||(13109552-13109760)
chr7 (28-81)||(13109799-13109853)
[»] chr8 (2 HSPs)
chr8 (86-192)||(44733379-44733485)
chr8 (31-81)||(44733289-44733340)
[»] chr3 (1 HSPs)
chr3 (106-192)||(48025920-48026006)
[»] chr6 (1 HSPs)
chr6 (86-192)||(8402320-8402426)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 24221095 - 24220788
Alignment:
Q  1 aacatggctaatagatatttgatgccctacgactaacaatgttagtttttctagagaacttgatgagttttttactccaaatcgacaaaggagttgtggc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  24221095 aacatggctaatagatatttgatgccctatgactaacaatgttagtttttctagagaacttgacgagtcttttactccaaatcgacaaaggagttgtggc 24220996  T
Q  101 tgctcaaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaaatgatgg-nnnnnnn 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||            
T  24220995 tgctcaaactctctaagatataaaatatatttcagatgttttatttatacctgagataaattaaagttgt--------tggacaaatgatggaaaaaaaa 24220904  T
Q  200 ctctttgcatttcaaagatatgaaatgcactatttttattcttttgggacttaattaatgtctcttgaaatcagaggcacaagttttccaaacgttctat 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24220903 ctctttgcatttcaaagatatgaaatgcactatttttattcttttgggacttaattaatgtctcttgaaatcagaggcacaagttttccaaaagttctat 24220804  T
Q  300 ttaaaattcttaacac 315  Q
    ||||||||||||||||    
T  24220803 ttaaaattcttaacac 24220788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 32799542 - 32799648
Alignment:
Q  86 caaaggagttgtggctgctcaaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaa 185  Q
    |||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||| | ||| |||||||| |||||  || |||||||||||||    
T  32799542 caaaggagttgtagctgttgaaactctctcaggtataaaatatatttcagatgttttatttgtgcctgagataaatcaaagtcttttgagtgttggacaa 32799641  T
Q  186 atgatgg 192  Q
    |||||||    
T  32799642 atgatgg 32799648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 32799452 - 32799503
Alignment:
Q  31 gactaacaatgttagtttttctagagaacttgatg-agttttttactccaaa 81  Q
    |||||||||||||||||||| || ||||||||||| | ||||||||||||||    
T  32799452 gactaacaatgttagtttttttaaagaacttgatgaatttttttactccaaa 32799503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 45337795 - 45337901
Alignment:
Q  86 caaaggagttgtggctgctcaaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaa 185  Q
    |||||||||||| |||| | ||||||||| || |||||||||||||||||||||||||||| | ||| |||||||| |||||  || |||||||||||||    
T  45337795 caaaggagttgtagctgttgaaactctctcaggtataaaatatatttcagatgttttatttgtgcctgagataaatcaaagtcttttgagtgttggacaa 45337894  T
Q  186 atgatgg 192  Q
    |||||||    
T  45337895 atgatgg 45337901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 45337705 - 45337756
Alignment:
Q  31 gactaacaatgttagtttttctagagaacttgatg-agttttttactccaaa 81  Q
    |||||||||||||||||||| || ||||||||||| | ||||||||||||||    
T  45337705 gactaacaatgttagtttttttaaagaacttgatgaatttttttactccaaa 45337756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 13109760 - 13109552
Alignment:
Q  86 caaaggagttgtggctgctcaaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaa 185  Q
    ||||||||||||| ||| | |||||| || || |||||||||||||||| ||||||||||| | ||| |||||||| |||||  || ||||||||  |||    
T  13109760 caaaggagttgtgactgttgaaactcactcaggtataaaatatatttcaaatgttttatttgtgcctgagataaatcaaagtcttttgagtgttgagcaa 13109661  T
Q  186 atgatgg---nnnnnnnctctttgcatttcaaagatatgaaatgcacta-tttttattcttttgggacttaattaatgtctcttgaaatcagaggcacaa 281  Q
    |||||||           ||||||||||| || |||||||||||||||| ||||||| |||||||  || ||||||||  | ||||||| ||||||| ||    
T  13109660 atgatggagaaaaaatattctttgcattttaaggatatgaaatgcactattttttatccttttggatctaaattaatgattgttgaaatgagaggcaaaa 13109561  T
Q  282 gttttccaa 290  Q
    | |||||||    
T  13109560 gctttccaa 13109552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 13109853 - 13109799
Alignment:
Q  28 tacgactaacaatgttagtttttctagagaacttgatgagt-tttttactccaaa 81  Q
    ||||||||||||||||||||||| || ||| |||||||| | |||||||||||||    
T  13109853 tacgactaacaatgttagtttttttaaagagcttgatgaatctttttactccaaa 13109799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 44733379 - 44733485
Alignment:
Q  86 caaaggagttgtggctgctcaaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaa 185  Q
    ||||||||||||||||| | ||||||| | || |||||||||||||| ||||||||||||| | ||| |||||||| |||||  || ||||||||| ||     
T  44733379 caaaggagttgtggctgttgaaactcttttaggtataaaatatattttagatgttttatttgtgcctgagataaatcaaagtcttttgagtgttgggcag 44733478  T
Q  186 atgatgg 192  Q
    |||||||    
T  44733479 atgatgg 44733485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 44733289 - 44733340
Alignment:
Q  31 gactaacaatgttagtttttctagagaacttgatgagt-tttttactccaaa 81  Q
    |||||||||||||||||||| || |||||||||||| | |||||||||||||    
T  44733289 gactaacaatgttagtttttttaaagaacttgatgaatctttttactccaaa 44733340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 48026006 - 48025920
Alignment:
Q  106 aaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaaatgatgg 192  Q
    ||||||||| || |||||||||||||| ||||||||||||| | ||| ||||||||||||||  || ||||||||| ||||||||||    
T  48026006 aaactctctcaggtataaaatatattttagatgttttatttgtgcctgagataaattaaagtcttttgagtgttgggcaaatgatgg 48025920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 8402426 - 8402320
Alignment:
Q  86 caaaggagttgtggctgctcaaactctctaagatataaaatatatttcagatgttttatttatacctaagataaattaaagttgttggagtgttggacaa 185  Q
    |||||||||| |||| | | ||||||||| |  ||||||||||||| |||||||||||||| |   |  ||||||| |||||  || |||||||||||||    
T  8402426 caaaggagttatggccgttgaaactctctcaagtataaaatatattacagatgttttatttgtgtttgggataaatcaaagtcttttgagtgttggacaa 8402327  T
Q  186 atgatgg 192  Q
    |||||||    
T  8402326 atgatgg 8402320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University