View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_high_24 (Length: 315)
Name: NF21107_high_24
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_24 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 2330458 - 2330755
Alignment:
| Q |
18 |
gaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
117 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2330458 |
gaagcatgttaaggagagtagattgaacaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
2330557 |
T |
|
| Q |
118 |
agcgaggatgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
217 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2330558 |
agtgaggatgaaatgattagtctttgttcggagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
2330657 |
T |
|
| Q |
218 |
acccggacgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgcat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2330658 |
acccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatgatgctggagagaaggaggaagtgaaagaggaagacttgcat |
2330755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 2320889 - 2321185
Alignment:
| Q |
18 |
gaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
117 |
Q |
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|||||| ||||||||||| | ||||| |||| |||||| ||||||||||||| |||||||||| | |||||||||||||| |||||||||| || ||| |
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| T |
2320889 |
gaagcaagttaaggagagtaaattgaacaatgataatacagttgtttcgtatgcagatactcttttagagttggagttgcccgaggagaaacgaaagttg |
2320988 |
T |
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| Q |
118 |
agcgaggatgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
217 |
Q |
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|| ||| |||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
2320989 |
agtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttggtgaagt |
2321088 |
T |
|
| Q |
218 |
acccggacgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgca |
314 |
Q |
| |
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||||||| || ||||||| |||||||||||||||| |||||||||| | | ||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
2321089 |
acccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggagagaaggaggaagtgaaagaggaaaacttgca |
2321185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 25 - 314
Target Start/End: Original strand, 2303195 - 2303484
Alignment:
| Q |
25 |
gttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattgagcgagg |
124 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||| || ||||| ||| |
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| T |
2303195 |
gttaaggagagtaaattgaacaatgttaatactgttgtttcgtatgcagatactcttctagagttggagttgcccgaggagaaacgaaagttgagtgaga |
2303294 |
T |
|
| Q |
125 |
atgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagtacccgga |
224 |
Q |
| |
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|||||||| ||| ||||||||| |||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
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| T |
2303295 |
atgaaatggttaatctttgttcagagtttctgaatggtgggacggatactacttccactactttgcaatggattatggcgaatttggttaagtacccaga |
2303394 |
T |
|
| Q |
225 |
cgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgca |
314 |
Q |
| |
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|| ||| ||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||| |
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| T |
2303395 |
agtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggagagaaggaggaagtgaaagaggaagaattgca |
2303484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 2326743 - 2327040
Alignment:
| Q |
18 |
gaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
117 |
Q |
| |
|
|||||| |||||||||| | ||||| |||| ||||||||||||||| || || ||||| ||| |||||||||||||||| ||| |||||||| ||| |
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| T |
2326743 |
gaagcaagttaaggagactaaattgaacaatgctaatactgttgtttcctacgtggatacacttttggagttggagttgccaatggaaaaacggaagttg |
2326842 |
T |
|
| Q |
118 |
agcgaggatgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
217 |
Q |
| |
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| |||||||||||| ||||||||||||| ||||||||||| | ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2326843 |
actgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcgaatttggtgaagt |
2326942 |
T |
|
| Q |
218 |
acccggacgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgcat |
315 |
Q |
| |
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||||||||||||| ||| ||||||| ||||||||| |||| | |||||||| |||| || || |||||||||| ||||||||||||||||||||||| |
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| T |
2326943 |
acccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtagagaaggaggaagtgaaagaggaagacttgcat |
2327040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 2350764 - 2351060
Alignment:
| Q |
18 |
gaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
117 |
Q |
| |
|
|||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||| |
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| T |
2350764 |
gaagcaagttaaagagagtagattgaacaatgttaaccctgtagtttcgtatgtggatactcttttggagttggagttgcctgatgagaaacggaaattg |
2350863 |
T |
|
| Q |
118 |
agcgaggatgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
217 |
Q |
| |
|
|| || ||||||||| ||||||||||||| ||||||||||| | ||| | |||||||||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
2350864 |
agtgaagatgaaatggttagtctttgttcagagtttttgaatgctgggatagatactacttccacggctttgcaatggattatggcaaatttggtgaagt |
2350963 |
T |
|
| Q |
218 |
acccggacgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgca |
314 |
Q |
| |
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|||| ||||| || |||| ||||||||| ||||||| ||||||||||||| | |||| ||||||||||| | |||||||||||||||| ||||| |
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| T |
2350964 |
accccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaatggagagaaggtggaagtgaaagaggaagatttgca |
2351060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 2293575 - 2293871
Alignment:
| Q |
18 |
gaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
117 |
Q |
| |
|
|||||| ||||||||||| | ||||| ||||||||||||||||||||| |||| ||||||||| | ||||| |||| |||| ||||||||||||| || |
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| T |
2293575 |
gaagcaagttaaggagagtaaattgaacaatattaatactgttgtttcatatgcagatactctcttagagttagagtggcctgaggagaaacggaagctg |
2293674 |
T |
|
| Q |
118 |
agcgaggatgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
217 |
Q |
| |
|
|| ||| |||||||| ||| ||||||||| ||||||||||||||||| || || ||||||||||| |||||| ||||||||||||||| | ||||||| |
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|
| T |
2293675 |
agtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtagtgaagt |
2293774 |
T |
|
| Q |
218 |
acccggacgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgca |
314 |
Q |
| |
|
|||| || || ||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
2293775 |
acccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagacttgca |
2293871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 2309906 - 2310202
Alignment:
| Q |
18 |
gaagcatgttaaggagagcagattgaccaatattaatactgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattg |
117 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||| |||||||||||||||| |||| |||||||||| | ||||| |||| |||| ||||||||||||| || |
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| T |
2309906 |
gaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatactcttttagagttagagtagcctgaggagaaacggaagctg |
2310005 |
T |
|
| Q |
118 |
agcgaggatgaaatgattagtctttgttccgagtttttgaacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagt |
217 |
Q |
| |
|
|| ||| |||||||| ||| ||||||||| ||||||||||||||||| || || ||||||||||| |||| | ||||||||||||||| ||||||||| |
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|
| T |
2310006 |
agtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttggagtggattatggcgaatgtggtgaagt |
2310105 |
T |
|
| Q |
218 |
acccggacgttcaggggaagcttgtggaggagattacggaggtgatgggtggcgatgatgctggagagaaggagaaagtgaaagaggaagacttgca |
314 |
Q |
| |
|
|||| || || |||||| |||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
2310106 |
acccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagacttgca |
2310202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 41126806 - 41126967
Alignment:
| Q |
57 |
tgttgtttcgtatgtagatactcttatggagttggagttgcctcaggagaaacggaaattgagcgaggatgaaatgattagtctttgttccgagtttttg |
156 |
Q |
| |
|
||||||||| |||| |||||||||| |||| ||||||||||| |||||||||| || |||| || ||||||||| | || |||||||| ||||||||| |
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| T |
41126806 |
tgttgtttcctatgcagatactcttttggaattggagttgcccgaggagaaacgcaagctgagtgaagatgaaatggtcagcctttgttcagagtttttg |
41126905 |
T |
|
| Q |
157 |
aacggtggcacggatactacttccaccgctttgcaatggattatggcgaatttggtgaagta |
218 |
Q |
| |
|
|| | |||||| || || || ||||| || | || ||||| ||||| |||||||||||||| |
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| T |
41126906 |
aatgctggcacagacacgacctccacggcgctccagtggatcatggctaatttggtgaagta |
41126967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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