View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_high_30 (Length: 252)
Name: NF21107_high_30
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 31190607 - 31190387
Alignment:
| Q |
14 |
ataatactacgactatgcactttacacttaatgtgtgtgagtttctgatagacattttaaaacaaaaataaataaagaatactagataatcaatcttaaa |
113 |
Q |
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| T |
31190607 |
ataatactacgactatgcactttacacttaatgtgtgtgagtttctgatagacattttaaaacaaaaataaataaagaatactagataatcaatcttaaa |
31190508 |
T |
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| Q |
114 |
tcacgtatcttcaattttttaacctaaaatgattatttacattttaacatgtcttcgatgacattaatgtttgtaaatattctaaccaagattcttagta |
213 |
Q |
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| T |
31190507 |
tcacgtatcttcaattttttaacctaaaatgattatttacattttaacatgtcttcgatgacattaatgtttgtaaatattctaaccaagattcttagta |
31190408 |
T |
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| Q |
214 |
caactatttcagagtattatg |
234 |
Q |
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| T |
31190407 |
caactatttcagagtattatg |
31190387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 76 - 218
Target Start/End: Complemental strand, 31202327 - 31202186
Alignment:
| Q |
76 |
caaaaataaataaagaatactagataatcaatcttaaatcacgtatcttcaa-ttttttaacctaaaatgattatttacattttaacatgtcttcgatga |
174 |
Q |
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| T |
31202327 |
caaaaataaataaaaaatactagataatcaatcttaaatcatgcgtcttcaaattttttaacctaaaatgattattcatattttagcatgtctttgatga |
31202228 |
T |
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| Q |
175 |
cattaatgtttgtaaatattctaaccaagattcttagtacaact |
218 |
Q |
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| T |
31202227 |
tattaatgtttgtga--attctaaccaagattctttgtacaact |
31202186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 31172803 - 31172667
Alignment:
| Q |
68 |
ttttaaaacaaaaataaataaagaatactagataatcaatcttaaatcacgtatcttcaat-tttttaacctaaaatgattatttacattttaacatgtc |
166 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||| |||||| |||||| |
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| T |
31172803 |
tttttaaacaaaaataaataaataatactagataatcaatcttaaatcacgtgtcttccatatttttaacctaaaatg---atttatattttagcatgtc |
31172707 |
T |
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| Q |
167 |
ttcgatgacattaatgtttgtaaatattctaaccaagattct |
208 |
Q |
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| T |
31172706 |
tttgagaacattaatgtttgtga--attctaaccgagattct |
31172667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 31151384 - 31151236
Alignment:
| Q |
45 |
tgtgtgtgagtttc--tgatagacattttaaaacaaaaataaataaagaa------tactagataatcaatcttaaatcacgtatcttcaattttttaac |
136 |
Q |
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| T |
31151384 |
tgtgtgtgagtttcacttatagacattttgaaacaaaaataaaaaaataaaaaaaatactagataatcaatcttaaatcacgagtcttcaattttttaac |
31151285 |
T |
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| Q |
137 |
ct----aaaatgattatttacattttaacatgtcttcgatgacattaat |
181 |
Q |
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| T |
31151284 |
ataaagaaaatgattatttatattttagcatgtctttggtgacattaat |
31151236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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