View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_high_36 (Length: 246)
Name: NF21107_high_36
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 44227120 - 44227268
Alignment:
| Q |
80 |
gtacattttctataatagttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagt |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44227120 |
gtacattttctataatagttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagt |
44227219 |
T |
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| Q |
180 |
ttctgcttttcttgaaaagcaagatcaccaacatcaacttcatgagcac |
228 |
Q |
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| T |
44227220 |
ttctgcttttcttgaaaagcaagatcaccaacatcaacttcatgagcac |
44227268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 80 - 228
Target Start/End: Original strand, 44214962 - 44215110
Alignment:
| Q |
80 |
gtacattttctataatagttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagt |
179 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44214962 |
gtacattttctataataattacctatcaactctttccttgaccttcaacagaaacccttcattatcctcttcagcaaccctaaccaacctctccaaaagc |
44215061 |
T |
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| Q |
180 |
ttctgcttttcttgaaaagcaagatcaccaacatcaacttcatgagcac |
228 |
Q |
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| T |
44215062 |
ttctgcttttctttaaaagcaagatcaccaacatcaacttcatgagcac |
44215110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 44238272 - 44238401
Alignment:
| Q |
99 |
tacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaag |
198 |
Q |
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| T |
44238272 |
tacctatcaactctctccttaaccttcaacagaaacccttcattatcttcttcagcaaccttaaccaacctctccaaaagtttctgtttatcttgaaaag |
44238371 |
T |
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| Q |
199 |
caagatcaccaacatcaacttcatgagcac |
228 |
Q |
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| T |
44238372 |
caagatcaccaacatcaacttcatgagcac |
44238401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 205
Target Start/End: Complemental strand, 2882368 - 2882261
Alignment:
| Q |
98 |
ttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaa |
197 |
Q |
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||||||||||| ||||||||||| |||||||| |||| ||||||| ||||||||||||| |||| |||||| ||||| |||||||| || |||||||| |
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| T |
2882368 |
ttacctatcaattctttccttgagcttcaacaaaaacttttcatttccctcttcagcaacattaatcaacctatccaagagtttctgtttctcttgaaat |
2882269 |
T |
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| Q |
198 |
gcaagatc |
205 |
Q |
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||||||| |
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| T |
2882268 |
ccaagatc |
2882261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 2872077 - 2871981
Alignment:
| Q |
99 |
tacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaa |
195 |
Q |
| |
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|||||||||| ||||||||| | |||||||| |||| |||||||||||||||||||| | || | |||||| | |||||||||||| ||||||||| |
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| T |
2872077 |
tacctatcaattctttcctttagcttcaacaaaaacttttcattatcctcttcagcagctttgatcaacctattcaaaagtttctgtctttcttgaa |
2871981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 2902705 - 2902814
Alignment:
| Q |
98 |
ttacctatcaactctttccttgaccttcaacagaaacctttcattatcctcttcagcaaccttaaccaacctctccaaaagtttctgcttttcttgaaaa |
197 |
Q |
| |
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||||||||||| ||||||||| | |||||||| |||| | ||||| ||||||||||||| || | |||||| ||||| ||||| || |||||||||| |
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| T |
2902705 |
ttacctatcaattctttccttaagcttcaacaaaaacttctcatttccctcttcagcaacattgatcaacctatccaatagtttttgtctttcttgaaat |
2902804 |
T |
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| Q |
198 |
gcaagatcac |
207 |
Q |
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||||||||| |
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| T |
2902805 |
ccaagatcac |
2902814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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