View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21107_high_37 (Length: 242)
Name: NF21107_high_37
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_37 |
 | |
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| [»] scaffold0011 (2 HSPs) |
| | |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 25112713 - 25112491
Alignment:
| Q |
18 |
tcatcgaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25112713 |
tcatcgaccaaaccatgcctatgcagcgatgaagattcgtcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaagag |
25112614 |
T |
|
| Q |
118 |
tgttaggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgt |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25112613 |
tgttaggaaaacaagtgctgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgt |
25112514 |
T |
|
| Q |
218 |
caataacagtgtcttaccctttg |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25112513 |
caataacagtgtcttaccctttg |
25112491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 25063187 - 25062965
Alignment:
| Q |
18 |
tcatcgaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
25063187 |
tcatcgaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgatgatagcgttgaatgtgttgttggttcaccatttcaagtggaagcaagag |
25063088 |
T |
|
| Q |
118 |
tgttaggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgt |
217 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||| || ||||||||||||||| |
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|
| T |
25063087 |
tgttaggaaaacaaatgttaattcggatccaatgtcaggagcacaaggggcttctagttaaaattatggttgaaattcaaagatatcaactatttgttgt |
25062988 |
T |
|
| Q |
218 |
caataacagtgtcttaccctttg |
240 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
25062987 |
caatagtagtgtcttaccctttg |
25062965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 25240695 - 25240917
Alignment:
| Q |
18 |
tcatcgaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaaaag |
117 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||| || |
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|
| T |
25240695 |
tcatcaaccaaaccatgcctatgcagcaatgaagattcttcatcatgtgatgatagtgttgaatgtgttattggttcaacatttcaagtggaagcaagag |
25240794 |
T |
|
| Q |
118 |
tgttaggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgt |
217 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||| ||||||| | ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
25240795 |
tgttaggaaaacaaatgttgattcgaattcaatgtcaggagcacagggggcttctcgttaaaattatggttgaaattcaaaaatatcaactatttgttgt |
25240894 |
T |
|
| Q |
218 |
caataacagtgtcttaccctttg |
240 |
Q |
| |
|
||||| ||||||| ||||||||| |
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|
| T |
25240895 |
caatagcagtgtcataccctttg |
25240917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 28717619 - 28717752
Alignment:
| Q |
98 |
atttcaagtggaagcaaaagtgttaggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaa |
197 |
Q |
| |
|
|||||| |||||||||| ||||||||| ||| |||||||| |||||||||| | || | ||||| |||| ||||||||||||||| | |||||| |
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|
| T |
28717619 |
atttcatgtggaagcaagagtgttagggaaagctatgttgatttggatccaatgacataagtacaaggg--ttctagttaaaattatggtcaagattcaa |
28717716 |
T |
|
| Q |
198 |
aaatttcaactatttgttgtcaataacagtgtctta |
233 |
Q |
| |
|
|||||| |||||||| || |||| |||| ||||||| |
|
|
| T |
28717717 |
aaatttaaactatttattttcaaaaacaatgtctta |
28717752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 28705721 - 28705785
Alignment:
| Q |
169 |
ttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgtcaataacagtgtctta |
233 |
Q |
| |
|
|||| ||||||||||||| | ||||| |||||||| |||||||||||||||| | || ||||||| |
|
|
| T |
28705721 |
ttctagttaaaattatggccaaaattaaaaaatttaaactatttgttgtcaaaagcaatgtctta |
28705785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 184900 - 185117
Alignment:
| Q |
23 |
gaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaaaagtgtta |
122 |
Q |
| |
|
|||||||||| |||||||||||| || ||||| ||||||| ||| || ||| |||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
184900 |
gaccaaaccagacctatgcagcgaagatgattcctcatcatttgatgagcacaatgaaagtgttgttggttcaatatttcaagtggaagcaaaagtgtta |
184999 |
T |
|
| Q |
123 |
ggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgtcaata |
222 |
Q |
| |
|
|| ||| | ||||||||||||||||||| || || | ||||||||| | || |||||||||||||| || |||| ||||||||||| | ||||||| | |
|
|
| T |
185000 |
gggaaatatatgttgattcggatccaatgtaaagaatacaaggggcttttagtgaaaattatggtcgagatccaaagatttcaactatgtattgtcaaca |
185099 |
T |
|
| Q |
223 |
acagtgtcttaccctttg |
240 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
185100 |
gtagtgttttaccctttg |
185117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 222795 - 223012
Alignment:
| Q |
23 |
gaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaaaagtgtta |
122 |
Q |
| |
|
|||||||||| ||| |||||||| || ||||| ||||||| ||| || || |||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
222795 |
gaccaaaccagacctctgcagcgaagatgattcctcatcatttgatgagcgcaatgaaagtgttgttggttcaatatttcaagtggaagcaaaagtgtta |
222894 |
T |
|
| Q |
123 |
ggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgtcaata |
222 |
Q |
| |
|
|| ||| | ||||||||||||||||||| || || | ||||||||| | || |||||||||||||| || |||| ||||||||||| ||||||||| | |
|
|
| T |
222895 |
gggaaatatatgttgattcggatccaatgtaaagaatacaaggggcttttagtgaaaattatggtcgagatccaaagatttcaactatatgttgtcaaca |
222994 |
T |
|
| Q |
223 |
acagtgtcttaccctttg |
240 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
222995 |
gcagtgttttaccctttg |
223012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 17116144 - 17116308
Alignment:
| Q |
75 |
attgaatgtgttgttggttcaccatttcaagtggaagcaaaagtgttaggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctgg |
174 |
Q |
| |
|
||||| |||||||||| || |||||||||||||||||||| | | ||||||||| | |||||||| ||||||||||| | ||||| ||||||||||| | |
|
|
| T |
17116144 |
attgattgtgttgttgatttaccatttcaagtggaagcaagaatcttaggaaaatatatgttgatt-ggatccaatgccaagagcacaaggggcttctag |
17116242 |
T |
|
| Q |
175 |
ttaaaattatggtcgaaattcaaaaatttcaactatttgttgtcaataacagtgtcttaccctttg |
240 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
17116243 |
ttaaaattatggttgagattcaaaggtttcaactatttgttgtaaataatagtgtcttaccttttg |
17116308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 17125531 - 17125748
Alignment:
| Q |
23 |
gaccaaaccatgcctatgcagcgatgaagattcttcatcatgtgaggataacattgaatgtgttgttggttcaccatttcaagtggaagcaaaagtgtta |
122 |
Q |
| |
|
|||||||||| |||| |||| | |||| | || || |||||||| || | |||||| |||||||||| || |||||||||||||||||||| | | ||| |
|
|
| T |
17125531 |
gaccaaaccaggcctctgcaacaatgacaactcctcgtcatgtgatgagagcattgattgtgttgttgatttaccatttcaagtggaagcaagaatctta |
17125630 |
T |
|
| Q |
123 |
ggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgtcaata |
222 |
Q |
| |
|
|||||| | |||||||||| ||||||||| | ||||| | |||||||| |||||||||||||| || ||||||| ||| ||||||| |||||||||| |
|
|
| T |
17125631 |
ggaaaatatatgttgattcgaatccaatgccaagagcacatagggcttctagttaaaattatggttgagattcaaaggtttaaactattcgttgtcaata |
17125730 |
T |
|
| Q |
223 |
acagtgtcttaccctttg |
240 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
17125731 |
atagtgtcttaccttttg |
17125748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 16748 - 16883
Alignment:
| Q |
82 |
gtgttgttggttcaccatttcaagtggaagcaaaagtgttaggaaaacaagtgttgattcggatccaatgcaaggagcataaggggcttctggttaaaat |
181 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||| ||||| ||| | | ||||||||||||||||| | ||||| ||||||||| | |||||||| |
|
|
| T |
16748 |
gtgttgttggtttaccatttcaagtggaagcaagagtcttagggaaatatatactgattcggatccaatgccaagagcacaaggggcttatagttaaaat |
16847 |
T |
|
| Q |
182 |
tatggtcgaaattcaaaaatttcaactatttgttgt |
217 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
16848 |
tatggtcgagattcaaaggtttcaactatttgttgt |
16883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 24333621 - 24333685
Alignment:
| Q |
169 |
ttctggttaaaattatggtcgaaattcaaaaatttcaactatttgttgtcaataacagtgtctta |
233 |
Q |
| |
|
|||| ||||||||||||| | ||||| |||||||| |||||||||||||||| | || ||||||| |
|
|
| T |
24333621 |
ttctagttaaaattatggccaaaattaaaaaatttaaactatttgttgtcaaaagcaatgtctta |
24333685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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