View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21107_high_39 (Length: 242)
Name: NF21107_high_39
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 25112799 - 25113014
Alignment:
| Q |
1 |
acagatagcttgtccatctagaagataataagaaagggttaaaaaataataatgttaaatgatagatttgtccttaaataaaattgatttgttttatttt |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25112799 |
acagatagtttatccatctagaagataataagaaagggttaaaaaataataatgttaaatgatagatttgtccttaaataaaattgatttgttttatttt |
25112898 |
T |
|
| Q |
101 |
aaagaaagataagaatgtaataaatatgtaaataattttcctatatttgtactccctccgctcgtaatttcatgtcaaagttttaccatgtgcctattca |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25112899 |
aaataaagataagaatgtaataaatatgtaaataattttcctatatttgcactccctccgctcgtaatttcatgtcaaagttttaccatgtgcctattca |
25112998 |
T |
|
| Q |
201 |
tataatcaactttaac |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
25112999 |
tataatcaactttaac |
25113014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 25240374 - 25240324
Alignment:
| Q |
45 |
aataataatgttaaatgatagatttgtccttaaataaaattgatttgtttt |
95 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
25240374 |
aataataatgctaaaagatagatctgtccttaaataaaattgatttttttt |
25240324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 25240313 - 25240210
Alignment:
| Q |
81 |
aaattgatttgttttattttaaagaaagataagaatgtaataaatatgtaaataattttcctatattt-gtactccctccgctcgtaatttcatgtcaaa |
179 |
Q |
| |
|
||||||||||||||||||| | ||||| || ||||||| ||||||||| ||||| |||||||||| |||||||||| ||| ||| | ||||||| | |
|
|
| T |
25240313 |
aaattgatttgttttatttaaggcaaagaaaacaatgtaacaaatatgtatttaattctcctatatttagtactccctcaactcataagtacatgtcaca |
25240214 |
T |
|
| Q |
180 |
gttt |
183 |
Q |
| |
|
|||| |
|
|
| T |
25240213 |
gttt |
25240210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University