View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_high_44 (Length: 238)
Name: NF21107_high_44
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 36722706 - 36722487
Alignment:
| Q |
18 |
aattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttcca |
117 |
Q |
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| T |
36722706 |
aattggcctacttcaagcagtatgagtagtactgttgaatctttgagtgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttcca |
36722607 |
T |
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| Q |
118 |
gggttcctattgt---------tggtggtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattcatc |
208 |
Q |
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| T |
36722606 |
gggttcctattgttgctggtgctggtggtggagctgctcaacctgttggtgctgctgctgctcgtgctggcaaaaaatttcatagtggctgtgattcatc |
36722507 |
T |
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| Q |
209 |
tacatctgctgttgatgatg |
228 |
Q |
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|||||||||||||||||||| |
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| T |
36722506 |
tacatctgctgttgatgatg |
36722487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 36709837 - 36709615
Alignment:
| Q |
18 |
aattggcctacttcaagcagtatgagtagtactgttgaatctttgactgggcctaggattgttcaggttgttggttcttcgtcttcttctgctgtttcca |
117 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| ||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
36709837 |
aattggcctacttcaagcggtatgagtagtaccgttgagtctttcagtgggcctaggattgttcagcttgttggttcttcgtcttcttctgttgtttcca |
36709738 |
T |
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| Q |
118 |
gggttcctattgttggtg------------gtggagctgctcaagctgttggtgctgctggtgctcgtgctggcgaaaaatttcatagtggctgtgattc |
205 |
Q |
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||||||||| |||||||| |||||| ||||||||||||||||| |||||||||| ||||||| ||| | ||||||||||| |||||||| |
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| T |
36709737 |
gggttcctactgttggtggtggtgctggtggtggagttgctcaagctgttggtggtgctggtgctggtgctggtgaagattttcatagtggttgtgattc |
36709638 |
T |
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| Q |
206 |
atctacatctgctgttgatgatg |
228 |
Q |
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|||| |||||| ||||||||||| |
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| T |
36709637 |
atcttcatctgttgttgatgatg |
36709615 |
T |
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