View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_high_51 (Length: 210)
Name: NF21107_high_51
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_high_51 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 44226978 - 44226879
Alignment:
| Q |
1 |
cgtttgtgggaagtagagctttgcctagtttcattaatgctgctactaatgttgtagaggtagggatagatatcagaacctgaaaattgatgctgaaggc |
100 |
Q |
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| T |
44226978 |
cgtttgtgggaagtagagctttgcctagtttcattaatgctgctactaatgttgtagaggtagggatagatatcagaacctgaaaattgatgctgaaggc |
44226879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 44214819 - 44214725
Alignment:
| Q |
3 |
tttgtgggaagtagagctttgcctagtttcattaatgctgctactaatgttgtagaggtagggatagatatcagaacctgaaaattgatgctgaa |
97 |
Q |
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| T |
44214819 |
tttgtgggaagtcgagctttgcctagtttcattaacgctgctactaatgttgtcgaggtagggatagatatcagaacctgaaaattgatgctgaa |
44214725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44237771 - 44237710
Alignment:
| Q |
1 |
cgtttgtgggaagtagagctttgcctagtttcattaatgctgctactaatgttgtagaggta |
62 |
Q |
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| T |
44237771 |
cgtttgtgggaagtagagctttgcctagtttcatcaatgctgctactaatgttatagaggta |
44237710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 158
Target Start/End: Complemental strand, 44226850 - 44226821
Alignment:
| Q |
129 |
gcagttgagtctcccaaataaaaatatata |
158 |
Q |
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| T |
44226850 |
gcagttgagtctcccaaataaaaatatata |
44226821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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