View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_high_52 (Length: 206)

Name: NF21107_high_52
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_high_52
NF21107_high_52
[»] chr4 (15 HSPs)
chr4 (18-193)||(8132274-8132449)
chr4 (42-188)||(4414413-4414559)
chr4 (44-188)||(6354929-6355073)
chr4 (44-180)||(8132791-8132927)
chr4 (79-186)||(43245677-43245784)
chr4 (43-181)||(19916397-19916535)
chr4 (44-137)||(28359685-28359778)
chr4 (43-169)||(24776144-24776270)
chr4 (44-144)||(8261038-8261138)
chr4 (44-144)||(8274455-8274555)
chr4 (44-180)||(12704623-12704759)
chr4 (41-137)||(25232681-25232777)
chr4 (44-180)||(55675420-55675556)
chr4 (42-175)||(7362119-7362251)
chr4 (44-137)||(44352087-44352180)
[»] chr2 (13 HSPs)
chr2 (44-193)||(6065465-6065614)
chr2 (41-188)||(16106674-16106821)
chr2 (44-188)||(21800642-21800786)
chr2 (99-169)||(24934893-24934963)
chr2 (99-169)||(25683585-25683655)
chr2 (41-169)||(10810536-10810664)
chr2 (44-180)||(35305263-35305399)
chr2 (44-167)||(19881939-19882062)
chr2 (41-167)||(32878694-32878820)
chr2 (43-154)||(16457741-16457852)
chr2 (44-137)||(3988705-3988798)
chr2 (44-137)||(24128753-24128846)
chr2 (120-168)||(7399190-7399238)
[»] chr3 (11 HSPs)
chr3 (44-188)||(51537148-51537292)
chr3 (44-188)||(29727737-29727881)
chr3 (41-167)||(53351168-53351294)
chr3 (44-181)||(42907769-42907906)
chr3 (42-180)||(42217128-42217266)
chr3 (41-180)||(15100601-15100740)
chr3 (44-166)||(35054690-35054812)
chr3 (44-137)||(23241872-23241965)
chr3 (44-125)||(27002522-27002603)
chr3 (40-137)||(33634879-33634976)
chr3 (41-137)||(29025256-29025352)
[»] chr1 (14 HSPs)
chr1 (44-188)||(32364121-32364265)
chr1 (41-181)||(33690156-33690296)
chr1 (44-180)||(44410712-44410848)
chr1 (44-188)||(3014131-3014274)
chr1 (110-159)||(45736152-45736201)
chr1 (44-180)||(3252226-3252362)
chr1 (39-185)||(24638697-24638840)
chr1 (41-137)||(37034888-37034984)
chr1 (104-159)||(4331946-4332001)
chr1 (44-179)||(27415198-27415333)
chr1 (116-169)||(45484220-45484273)
chr1 (44-168)||(962474-962598)
chr1 (67-167)||(20117824-20117924)
chr1 (120-180)||(46545456-46545516)
[»] chr5 (11 HSPs)
chr5 (43-168)||(32383867-32383992)
chr5 (44-188)||(18942249-18942393)
chr5 (44-188)||(17644165-17644309)
chr5 (42-167)||(29823255-29823380)
chr5 (44-188)||(6273128-6273272)
chr5 (43-188)||(35456506-35456651)
chr5 (44-188)||(14351897-14352041)
chr5 (42-137)||(8761104-8761199)
chr5 (110-180)||(33224909-33224979)
chr5 (44-168)||(6459707-6459831)
chr5 (46-166)||(13956932-13957052)
[»] chr8 (7 HSPs)
chr8 (41-164)||(32493168-32493291)
chr8 (41-167)||(8014901-8015027)
chr8 (41-179)||(36833901-36834039)
chr8 (67-188)||(28761640-28761761)
chr8 (44-137)||(31008545-31008638)
chr8 (44-168)||(20821775-20821899)
chr8 (41-137)||(42063459-42063555)
[»] chr6 (6 HSPs)
chr6 (44-179)||(6817290-6817425)
chr6 (42-193)||(23595689-23595840)
chr6 (99-169)||(35166055-35166125)
chr6 (46-169)||(31513351-31513474)
chr6 (43-188)||(29419728-29419864)
chr6 (43-137)||(24068207-24068301)
[»] chr7 (15 HSPs)
chr7 (46-180)||(33628226-33628360)
chr7 (39-193)||(34191857-34192011)
chr7 (44-167)||(45269430-45269553)
chr7 (44-188)||(46170641-46170785)
chr7 (44-167)||(9822519-9822642)
chr7 (44-167)||(10724444-10724567)
chr7 (45-179)||(10198308-10198442)
chr7 (90-179)||(33610636-33610725)
chr7 (44-144)||(20131356-20131456)
chr7 (44-168)||(34259253-34259377)
chr7 (41-178)||(16216974-16217111)
chr7 (44-137)||(24096730-24096823)
chr7 (44-180)||(11734209-11734345)
chr7 (120-180)||(25069374-25069434)
chr7 (110-166)||(45340299-45340355)
[»] scaffold0242 (1 HSPs)
scaffold0242 (44-137)||(17862-17955)
[»] scaffold0116 (1 HSPs)
scaffold0116 (41-137)||(7836-7932)
[»] scaffold0231 (1 HSPs)
scaffold0231 (44-145)||(11035-11136)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 8132274 - 8132449
Alignment:
Q  18 agatggacgaagctggcactaggaagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattg 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||    
T  8132274 agatggacgaagctggcactaggaagcatagttttaaaattcggtttgttcatcaattcagcaggggtactgagtcactaggttaatggttaaaccattg 8132373  T
Q  118 gatcattggttgaaccgcataactaaattggattaaatcgaataactcggtttgatgactcggccttaagaataat 193  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||    
T  8132374 gatcattggttgaaccgcataactaaatcgaattaaattgaataacttggtttgatgactcggccttaagaataat 8132449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 188
Target Start/End: Original strand, 4414413 - 4414559
Alignment:
Q  42 agcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataact 141  Q
    |||||||||||||||||||| | | ||||| ||| |||||||||| || |||||| ||| ||||||  ||||| ||  ||| | |||||||||||| |||    
T  4414413 agcatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcactgggtcaatggtcgaaccactgagtcacttgttgaaccgcatgact 4414512  T
Q  142 aaattggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
     ||| |||||||| || |||||||| ||  ||||||||| |||||||    
T  4414513 gaatcggattaaaccggataactcgattaaatgactcggtcttaaga 4414559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 6355073 - 6354929
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| |  || |||  ||||||||| ||||||||||  ||||||||  ||| | |||||||||||| ||| |    
T  6355073 catagttttaaaactcggctcggtcatcgactcgatagaggttctgagtcactgggttaatggtcgaaccattgagtcaatagttgaaccgcatgactga 6354974  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    |  |||||||| |||||||| ||||| |||||||| |||||||||    
T  6354973 accggattaaaccgaataacccggttagatgactcagccttaaga 6354929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 8132791 - 8132927
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| || || |||| || ||||||  |||||||||| ||||| ||  |||||||||||||||||| ||| |    
T  8132791 catagttttaaaactcggctcggtcatcgactcggtagaggtactgggtcactgagttaatggttgaaccactgagtcattggttgaaccgcatgactga 8132890  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    |  |||||||| || ||||||||| | | ||||||||    
T  8132891 accggattaaaccggataactcggctagttgactcgg 8132927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 43245784 - 43245677
Alignment:
Q  79 caggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtttgatgactc 178  Q
    ||||||||||| |||||| ||||||||||  ||||||||  | | |||||||||||||||||| ||  |||| ||||| |||||||||||   |||||||    
T  43245784 caggggtattgggtcactgggttaatggtcgaaccattgagttactggttgaaccgcataactgaaccggatcaaatcaaataactcggtcatatgactc 43245685  T
Q  179 ggccttaa 186  Q
    || |||||    
T  43245684 ggtcttaa 43245677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 19916535 - 19916397
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataacta 142  Q
    ||||||||||||||||||| | | ||||| ||   |||| |||| || |||| | | ||||||||  ||||| || ||| ||||||||||||||| |||     
T  19916535 gcatagttttaaaactcggctcggtcatcgacacagcagaggtactgggtcattggattaatggtcgaaccactgaatcgttggttgaaccgcatgactg 19916436  T
Q  143 aattggattaaatcgaataactcggtttgatgactcggc 181  Q
    || || ||||||  ||||||||||||| |||||||||||    
T  19916435 aactgaattaaactgaataactcggttagatgactcggc 19916397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 28359778 - 28359685
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||| | | ||||  ||| ||||| ||||||| |||||| ||| |||| |  |||||||||||||||| |||||||||||    
T  28359778 catagttttaaaactcggctcggtcattgactcggcagaggtattgggtcactgggtcaatgatcgaaccattggatcattgattgaaccgcat 28359685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 169
Target Start/End: Complemental strand, 24776270 - 24776144
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataacta 142  Q
    ||||||||||||||||||| | |  |||| ||| || || ||||||| |||||| |||  |||||  ||||| ||||||||||||||||| ||||  ||     
T  24776270 gcatagttttaaaactcggctcggccatcgactcggtagaggtattgggtcactgggtcgatggtcgaaccactggatcattggttgaactgcatggctg 24776171  T
Q  143 aattggattaaatcgaataactcggtt 169  Q
    ||| |||| |||||| || ||||||||    
T  24776170 aatcggatcaaatcggatgactcggtt 24776144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 8261138 - 8261038
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| |||  |||  ||| || ||||||  ||||||||| ||| ||||||| ||||||||| ||||||||  |||| ||| |||||    
T  8261138 catagttttaaaactcggcttggacattgactcggtaggggtgctgagtcactgggtcaatggttgaaccattgggtcattggtcaaaccacatgactaa 8261039  T
Q  144 a 144  Q
    |    
T  8261038 a 8261038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 8274555 - 8274455
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| |||  |||  ||| || ||||||  ||||||||| ||| ||||||| ||||||||| ||||||||  |||| ||| |||||    
T  8274555 catagttttaaaactcggcttggacattgactcggtaggggtgctgagtcactgggtcaatggttgaaccattgggtcattggtcaaaccacatgactaa 8274456  T
Q  144 a 144  Q
    |    
T  8274455 a 8274455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 12704759 - 12704623
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| |||||||| ||||| || ||||||| || ||||||  ||||| ||  |||||| | ||||||||| ||| |    
T  12704759 catagttttaaaactcggctcggtcatcgactaggcatgggtactgggtcactaagtcaatggtcgaaccactgagtcattgatcgaaccgcattactga 12704660  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    |  |||| || ||| || |||||||| ||| ||||||    
T  12704659 accggatcaactcggatgactcggttagataactcgg 12704623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 25232777 - 25232681
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||||||||||| | | ||||| ||| |||||||||| || |||| | ||| ||||||  ||||| ||  |||||||| |||||||||    
T  25232777 aagcatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcat 25232681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 55675420 - 55675556
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| | |||||||| || |||| ||||| ||||||  || || ||  |||||||| ||||||||  |||||    
T  55675420 catagttttaaaactcggctcggtcatcgactcgacaggggtactgggtcaataggtcaatggtcgaatcactgagtcattggtcgaaccgcaagactaa 55675519  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    |  ||||||| ||||||  ||||||| ||| ||||||    
T  55675520 accggattaactcgaatggctcggttagataactcgg 55675556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 7362119 - 7362251
Alignment:
Q  42 agcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataact 141  Q
    ||||||||||||||||| |||| | ||||| ||| | ||  |||||||  ||||| | ||||||||  ||||| |  ||||||||||||||||||| | |    
T  7362119 agcatagttttaaaacttggttcggtcatcgactcgacaaaggtattggatcact-gattaatggtcgaaccactaaatcattggttgaaccgcatgatt 7362217  T
Q  142 aaattggattaaatcgaataactcggtttgatga 175  Q
     || | ||||||| ||||||||||| || |||||    
T  7362218 gaactagattaaaccgaataactcgattagatga 7362251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 44352087 - 44352180
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||||| | ||||| ||| ||||  |||| || ||||||  ||  |||||  ||||||||| ||| ||||||||||||||    
T  44352087 catagttttaaaactcggttcggtcatcgactcggcataggtactgggtcactgagtcgatggtcgaaccattgggtcactggttgaaccgcat 44352180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 6065614 - 6065465
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||||  | ||||| | | |||||||||| ||||||||| ||||||||||  ||||| ||| |||||||||||||||||| ||| |    
T  6065614 catagttttaaaactcggtccggtcatcgattcggcaggggtactgagtcactgggttaatggtcgaaccactgggtcattggttgaaccgcatgactga 6065515  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaagaataat 193  Q
    ||  ||||||| |||||||||||||||||||||| |||||||||||||||    
T  6065514 atcagattaaaccgaataactcggtttgatgacttggccttaagaataat 6065465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 16106821 - 16106674
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| |||| | |||||| |||||| ||||||||||  ||||| ||  ||| |||||||||||||| ||    
T  16106821 aagcatagttttaaaactcggctcggtcatcgactcggcaagagtattgggtcactgggttaatggtcgaaccactgagtcactggttgaaccgcatgac 16106722  T
Q  141 taaattggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    | ||| |||||||| |  ||||||||||| |||||||||  |||||||    
T  16106721 tgaatcggattaaaccagataactcggttagatgactcgatcttaaga 16106674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 21800786 - 21800642
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| || |||||||  | |||||| ||| ||||||  || || ||| ||| ||||||||| |||| ||| |    
T  21800786 catagttttaaaactcggctcggtcatcgactcggtaggggtaccgggtcactgggtcaatggtcgaatcactgggtcactggttgaactgcatgactga 21800687  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || ||||||||||| |||||||||||  ||||||||| |||||||    
T  21800686 atcggattaaatcggataactcggttaaatgactcggtcttaaga 21800642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 24934893 - 24934963
Alignment:
Q  99 gttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtt 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||    
T  24934893 gttattggttgaaccactggatcattggttgaaccgcataactgaactgtattaaatcggataactcggtt 24934963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 25683585 - 25683655
Alignment:
Q  99 gttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtt 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||    
T  25683585 gttattggttgaaccactggatcattggttgaaccgcataactgaactgtattaaatcggataactcggtt 25683655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 10810664 - 10810536
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| ||||  |||| || |||| | |||||||| |  ||||| ||| |||| ||||||||||||| ||    
T  10810664 aagcatagttttaaaactcggctcgatcatcgactcggcaacggtactgggtcaatgggttaatgatcgaaccactgggtcatcggttgaaccgcatgac 10810565  T
Q  141 taaattggattaaatcgaataactcggtt 169  Q
    | |||  ||||||| ||||||||||||||    
T  10810564 tgaatcagattaaaccgaataactcggtt 10810536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 35305399 - 35305263
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| |||||||||| || |||||| ||| ||||||  ||||| ||  |||||||| ||||||||| ||| |    
T  35305399 catagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcactgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactga 35305300  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    |  |||| || ||| || |||||||| ||| ||||||    
T  35305299 accggatcaactcggatgactcggttagataactcgg 35305263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 19881939 - 19882062
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||  ||| ||| |||||| || |||||| ||| ||||||  ||||| ||  |||||||| ||||||||||||| |    
T  19881939 catagttttaaaactcggctcggtcattgactcggcgggggtactgggtcacttggtcaatggtcgaaccagtgagtcattggtcgaaccgcataactga 19882038  T
Q  144 attggattaaatcgaataactcgg 167  Q
    |  |||||||| || |||||||||    
T  19882039 accggattaaaccggataactcgg 19882062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 32878820 - 32878694
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | || || ||| ||| |||||| || ||| || ||| ||||||  ||||| ||  |||||||| ||||||||||||    
T  32878820 aagcatagttttaaaactcggctcggtcgtcgactcggcgggggtactgggtccctgggtcaatggtcgaaccaatgagtcattggtcgaaccgcataac 32878721  T
Q  141 taaattggattaaatcgaataactcgg 167  Q
    | ||| | |||||| || |||||||||    
T  32878720 tgaatcgaattaaaccggataactcgg 32878694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 16457852 - 16457741
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataacta 142  Q
    ||||||||||||||||||| | | ||||| | | |||| |||||||| |||| |  |||||||||  ||||| || |||| |||||||| |||||||||     
T  16457852 gcatagttttaaaactcggctcggtcatcgattcggcatgggtattgggtcaatgagttaatggtggaaccactgaatcactggttgaatcgcataactg 16457753  T
Q  143 aattggattaaa 154  Q
    ||| | ||||||    
T  16457752 aatcgaattaaa 16457741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 3988705 - 3988798
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||| | | ||||  ||| ||||||| || || |||| | ||| ||||||  || |||||| ||||||||||||||||||    
T  3988705 catagttttaaaactcggctcggtcattgactcggcagggatactgggtcattgggtcaatggtcgaatcattgggtcattggttgaaccgcat 3988798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Original strand, 24128753 - 24128846
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||| | | ||||| ||| ||| |||||| || |||| | ||| ||||||  ||||| || ||||||||| |||||||||    
T  24128753 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgaatcattggtcgaaccgcat 24128846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 7399190 - 7399238
Alignment:
Q  120 tcattggttgaaccgcataactaaattggattaaatcgaataactcggt 168  Q
    ||||| |||||||||||| ||| ||| ||||||||| ||||||||||||    
T  7399190 tcattcgttgaaccgcattactgaatcggattaaattgaataactcggt 7399238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 51537292 - 51537148
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| ||||||||||||| |||||| ||||||||||  ||||| ||| ||| ||||||||||||||  || |    
T  51537292 catagttttaaaactcggctcggtcatcgactcggcaggggtattgggtcactgggttaatggtcgaaccactgggtcactggttgaaccgcatgtctga 51537193  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || |||||||| || ||||||||||| |||||||||| |||||||    
T  51537192 atcggattaaaccggataactcggttagatgactcggtcttaaga 51537148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 29727737 - 29727881
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| | | ||||||||||||| |||| | ||||||||||| ||||| ||  ||| | |||||||||||| ||| |    
T  29727737 catagttttaaaactcggctcggtcatcgattcggcaggggtattgggtcattgggttaatggttgaaccactgagtcactagttgaaccgcatgactga 29727836  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || |||||||| || ||||||| ||| |||||||||| |||||||    
T  29727837 atcggattaaaccggataactcagttagatgactcggtcttaaga 29727881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 53351168 - 53351294
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| |||||||||| || |||| ||||||||||||| ||||| ||  || ||||||||||||||| ||    
T  53351168 aagcatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcattaggttaatggttgaaccactgagtcgttggttgaaccgcatgac 53351267  T
Q  141 taaattggattaaatcgaataactcgg 167  Q
    | ||  |||||||| || |||||||||    
T  53351268 tgaaccggattaaaccggataactcgg 53351294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 181
Target Start/End: Original strand, 42907769 - 42907906
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | |  || ||| |||||||| | || |||| ||||||||||||  ||||| ||  |||||||||||||||||| ||| |    
T  42907769 catagttttaaaactcggctcggttgtcgactcggcaggggcactgggtcattaggttaatggtcgaaccactgagtcattggttgaaccgcatgactga 42907868  T
Q  144 attggattaaatcgaataactcggtttgatgactcggc 181  Q
    |  |||||||| || || |||||||| |||||||||||    
T  42907869 accggattaaaccgtattactcggttagatgactcggc 42907906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 42217266 - 42217128
Alignment:
Q  42 agcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataact 141  Q
    |||||||||||||||||||| | | ||||| ||| || |  |||| || |||| |  |||||||||  ||||| ||  ||| |||||||||||||| |||    
T  42217266 agcatagttttaaaactcggctcggtcatcgactcggtaaaggtactgggtcattgagttaatggtcgaaccactgagtcactggttgaaccgcatgact 42217167  T
Q  142 aaattggattaaatcgaataactcggtttgatgactcgg 180  Q
     ||| |||||||| |||||||||||| | ||||||||||    
T  42217166 gaatcggattaaaccgaataactcggctagatgactcgg 42217128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 15100601 - 15100740
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| |  | || ||||| |||| | ||||||||||  ||||| ||  ||| || ||||||||||| ||    
T  15100601 aagcatagttttaaaactcggctcgatcatcgactcgataaggatattgggtcattgggttaatggtcgaaccactgagtcactgattgaaccgcatgac 15100700  T
Q  141 taaattggattaaatcgaataactcggtttgatgactcgg 180  Q
    | ||| |||||||| |||||||||||| |  |||||||||    
T  15100701 tgaatcggattaaaccgaataactcggctaaatgactcgg 15100740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 35054812 - 35054690
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| |||| ||||| || |||| |  |||||||||  ||||||||| ||| |||||||||||||| ||| |    
T  35054812 catagttttaaaactcggctcggtcatcgactcggcatgggtactgggtcagtgagttaatggtcgaaccattgggtcactggttgaaccgcatgactga 35054713  T
Q  144 attggattaaatcgaataactcg 166  Q
    |  | |||||| | |||||||||    
T  35054712 accgaattaaaccaaataactcg 35054690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 23241965 - 23241872
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||| |||| | | ||||| ||| ||| ||||||||| |||| | ||| ||||||  ||||| || ||||||||| |||||||||    
T  23241965 catagttttaaaattcggctcggtcatcgactcggcgggggtattgggtcaatgggtcaatggtcgaaccactgaatcattggtcgaaccgcat 23241872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 27002522 - 27002603
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattg 125  Q
    |||||||||||||||||| | |  |||  ||| |||| ||||| ||||||||| ||| ||||||| ||| ||||||||||||    
T  27002522 catagttttaaaactcggctcggacattgactcggcaagggtactgagtcactgggtcaatggttgaactattggatcattg 27002603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 33634879 - 33634976
Alignment:
Q  40 gaagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||||||||| | ||||| ||| ||| |||||| || || | | ||| ||||||  ||||| ||  |||||||| |||||||||    
T  33634879 gaagcatagttttaaaactcggttcgatcatcgactcggcgggggtactgggttaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcat 33634976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 29025256 - 29025352
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||||||||| | | | ||||| ||| ||| |||||| || |||| | ||| ||||||| ||||| ||  |||||||| |||||||||    
T  29025256 aagcatagttttaaaactcagctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggttgaaccagtgagtcattggtcgaaccgcat 29025352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 32364121 - 32364265
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    ||||||||||||| |||| | | ||||| ||| | ||||||||||| ||| || ||||||||||  ||||| ||| ||| |||||||||||||| ||| |    
T  32364121 catagttttaaaattcggctcggtcatcgactcgacaggggtattgggtcgctgggttaatggtcgaaccactgggtcactggttgaaccgcatgactga 32364220  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || |||||||| || ||||||||||| |||||||||| |||||||    
T  32364221 atcggattaaaccggataactcggttagatgactcggtcttaaga 32364265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 41 - 181
Target Start/End: Original strand, 33690156 - 33690296
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| |||||||||| || |||| | ||||||||||  ||||| ||  || ||||||||||||||| |     
T  33690156 aagcatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcattgggttaatggtcgaaccactgagtcgttggttgaaccgcatgat 33690255  T
Q  141 taaattggattaaatcgaataactcggtttgatgactcggc 181  Q
    | ||| |||||||| |||||||||||||| |||||||||||    
T  33690256 tgaatcggattaaaccgaataactcggttagatgactcggc 33690296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 44410712 - 44410848
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||||| | ||||| ||| |||| ||||| || |||||| ||||||||||  ||||| ||  ||| |||||||||||||| |||||    
T  44410712 catagttttaaaactcggttcggtcatcgactcggcaagggtactgggtcactgggttaatggtcgaaccactgagtcactggttgaaccgcatgactaa 44410811  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    ||  ||||||| |||||||||||| | ||||||||||    
T  44410812 atcagattaaaccgaataactcggctagatgactcgg 44410848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 3014274 - 3014131
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||  | ||| ||| ||| |||||||||| || |||||| | ||||||||  ||||| ||  |||||||||||||| ||| ||| |    
T  3014274 catagttttaaaactcgtctcgtt-atcgactcggcaggggtactgggtcactggattaatggtcgaaccactgagtcattggttgaaccacatgactga 3014176  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    |  |||||||| ||||||||||||||  ||||| ||| |||||||    
T  3014175 accggattaaaccgaataactcggttaaatgacccggtcttaaga 3014131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 45736152 - 45736201
Alignment:
Q  110 aaccattggatcattggttgaaccgcataactaaattggattaaatcgaa 159  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||    
T  45736152 aaccattgaatcattggttgaaccgcataactaaatcagattaaatcgaa 45736201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 180
Target Start/End: Original strand, 3252226 - 3252362
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| || || |||| || ||||||  |||||||||| ||||| ||  ||| |||||||||||||| ||| |    
T  3252226 catagttttaaaactcggctcggtcatcgactcggtagaggtactgggtcactgagttaatggttgaaccactgagtcactggttgaaccgcatgactga 3252325  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    |  |||||||| || ||||||||| | | ||||||||    
T  3252326 accggattaaaccggataactcggctagttgactcgg 3252362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 185
Target Start/End: Original strand, 24638697 - 24638840
Alignment:
Q  39 ggaagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcata 138  Q
    ||||||||||||||||||||| | | | ||||| ||| |||| ||||| || |||| |  |||||||||  |||   ||| ||| ||||||||||||||     
T  24638697 ggaagcatagttttaaaactcagctcggtcatcgactcggcatgggtagtgggtcagtgagttaatggtcgaac---tgggtcactggttgaaccgcatg 24638793  T
Q  139 actaaattggattaaatcgaataactcggtttgatgactcggcctta 185  Q
    ||| || ||||||||| |||||||||||||  | |||||||| ||||    
T  24638794 actgaactggattaaaccgaataactcggtaagttgactcggtctta 24638840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 37034984 - 37034888
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||||||||||| | | ||||| ||| |||| ||||| || || ||| ||| ||||||  ||||| ||| |||||||| |||||||||    
T  37034984 aagcatagttttaaaactcggctcgatcatcgactcggcatgggtactgggttactgggtcaatggtcgaaccactgggtcattggtcgaaccgcat 37034888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 4332001 - 4331946
Alignment:
Q  104 tggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaa 159  Q
    ||||| ||||| ||| |||||||||||||||||| ||||||| |||||||| ||||    
T  4332001 tggttgaaccactgggtcattggttgaaccgcatgactaaatcggattaaaccgaa 4331946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 27415333 - 27415198
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||  |||  || | ||||||| || | ||||| || |||||| | | ||||||| ||||| |||||||||||||||||||||  ||| |    
T  27415333 catagttttaaaaaccggactggtgatcaactcggtaagggtactgggtcactggttcaatggttgaaccactggatcattggttgaaccgcacgactga 27415234  T
Q  144 attggattaaatcgaataactcggtttgatgactcg 179  Q
    || | ||| || ||||| ||||||||  ||||||||    
T  27415233 atcgaattgaaccgaatgactcggttatatgactcg 27415198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 45484220 - 45484273
Alignment:
Q  116 tggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtt 169  Q
    ||||||| |||||||||||||| ||| ||| |||||||| || |||||||||||    
T  45484220 tggatcactggttgaaccgcatgactgaatcggattaaaccggataactcggtt 45484273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 962598 - 962474
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| ||||  |||| |  |||| || |||||||||  ||||| ||  ||| |||||||||| ||| ||| |    
T  962598 catagttttaaaactcggctcggtcatcgactcggcataggtactaggtcaataagttaatggtcgaaccactgagtcactggttgaaccacatgactga 962499  T
Q  144 attggattaaatcgaataactcggt 168  Q
    |  |||||||| |||||||||||||    
T  962498 accggattaaaccgaataactcggt 962474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 20117924 - 20117824
Alignment:
Q  67 tcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcg 166  Q
    ||||||||| || |||| || ||||||| | ||| ||||||  ||||||||  | |||||||||||||||| ||||||| | ||| ||||| || |||||    
T  20117924 tcatcaactcggtagggatactgagtcattgggtcaatggtcgaaccattgagttattggttgaaccgcatgactaaatcgaattgaatcggatgactcg 20117825  T
Q  167 g 167  Q
    |    
T  20117824 g 20117824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 46545456 - 46545516
Alignment:
Q  120 tcattggttgaaccgcataactaaattggattaaatcgaataactcggtttgatgactcgg 180  Q
    |||||||||||||||||| ||| ||  | ||||||||| |||||||||||  |||||||||    
T  46545456 tcattggttgaaccgcatgactgaaccgtattaaatcggataactcggttgtatgactcgg 46545516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 32383992 - 32383867
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataacta 142  Q
    ||||||||||||||||||| | | ||||| ||| |  |||| || || ||||||||||||||| || ||||| ||  |||||||||||||||||| |||     
T  32383992 gcatagttttaaaactcggctcggtcatcgactcgatagggatactgggtcactaggttaatgattgaaccactgtgtcattggttgaaccgcatgactg 32383893  T
Q  143 aattggattaaatcgaataactcggt 168  Q
    |||||||||||| |||||||||||||    
T  32383892 aattggattaaaccgaataactcggt 32383867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 18942249 - 18942393
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| || |||||||  | |||||| ||| ||||||  ||||| ||||| | |||||||||||||| ||| |    
T  18942249 catagttttaaaactcggctcggtcatcgactcggtaggggtaccgggtcactgggtcaatggtcgaaccactggatgactggttgaaccgcatgactga 18942348  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || ||||||||||| ||||||| |||  ||||||||| |||||||    
T  18942349 atcggattaaatcggataactcagttaaatgactcggtcttaaga 18942393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 17644309 - 17644165
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||  | | ||||| | | || |||||||| | |||||| ||| ||||||  ||||| ||||||| |||| ||||| ||| ||| |    
T  17644309 catagttttaaaactcgactcggtcatcgattcggtaggggtatcgggtcactgggtcaatggtcgaaccactggatcaatggtcgaaccacatgactga 17644210  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || ||||||||||| |||||||||||  ||||||||| |||||||    
T  17644209 atcggattaaatcggataactcggttaaatgactcggtcttaaga 17644165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 29823255 - 29823380
Alignment:
Q  42 agcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataact 141  Q
    ||||||||||||||| |||| | | ||||| ||| ||| |||||| || |||||||||| ||||||  ||||| || ||||||| | |||||||||||||    
T  29823255 agcatagttttaaaattcggctcggtcatcgactcggcgggggtactgggtcactaggtcaatggtcgaaccagtgaatcattgatcgaaccgcataact 29823354  T
Q  142 aaattggattaaatcgaataactcgg 167  Q
     ||  |||||||| || |||||||||    
T  29823355 gaaccggattaaaccggataactcgg 29823380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 6273128 - 6273272
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| |||||||| | || || | | ||||||||||  ||||| ||  ||| |||| |||||| || ||| |    
T  6273128 catagttttaaaactcggctcggtcatcgactcggcaggggcactgggttattgggttaatggtcgaaccactgagtcaatggtcgaaccgtatgactga 6273227  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    |  |||| ||| |||||||||||||| ||||||||||||||||||    
T  6273228 accggatcaaaccgaataactcggttagatgactcggccttaaga 6273272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Original strand, 35456506 - 35456651
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataacta 142  Q
    ||||||||||||||||||| | | ||||||||| || ||||||| ||  ||| | | | ||||||  ||||| ||  ||| |||||||||||||| |||     
T  35456506 gcatagttttaaaactcggctcggtcatcaacttgggaggggtactggttcattggatcaatggtcgaaccactgagtcactggttgaaccgcatgactg 35456605  T
Q  143 aattggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    ||| |||||||| || |||||||||||  |||||| || |||||||    
T  35456606 aatcggattaaaccggataactcggttaaatgacttggtcttaaga 35456651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 188
Target Start/End: Complemental strand, 14352041 - 14351897
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| || ||||| ||||  ||| |  |||||||||  ||||| ||  ||||| |||||||||||| ||| |    
T  14352041 catagttttaaaactcggctcggtcatcgactcggtaggggcattggatcagtgagttaatggtcgaaccactgagtcattagttgaaccgcatgactga 14351942  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    || |||||||| || |||||||||||  ||||| ||| |||||||    
T  14351941 atcggattaaaccggataactcggttatatgacccggtcttaaga 14351897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 8761199 - 8761104
Alignment:
Q  42 agcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||||| | | ||||| ||| ||| |||||| || |||| ||||| ||||||  ||||| ||  |||||||| |||||||||    
T  8761199 agcatagttttaaaactcggatcggtcatcgactcggcgggggtactgggtcaataggtcaatggtcgaaccactgagtcattggtcgaaccgcat 8761104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 33224979 - 33224909
Alignment:
Q  110 aaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtttgatgactcgg 180  Q
    ||||| |||||||||||||||||||||| ||||| | || || || | ||||||||||||  |||||||||    
T  33224979 aaccactggatcattggttgaaccgcatgactaactcggtttgaaccaaataactcggttgtatgactcgg 33224909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 6459707 - 6459831
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||| | | | || || ||| |||| ||||| || |||| |  |||||||||  ||||| ||| ||| |||||||||||||| ||| |    
T  6459707 catagttttaaaactcagctcggtcgtcgactcggcatgggtactgggtcaatgagttaatggtcgaaccactgggtcactggttgaaccgcatgactga 6459806  T
Q  144 attggattaaatcgaataactcggt 168  Q
    || |||||||| |  ||||||||||    
T  6459807 atcggattaaaccagataactcggt 6459831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 13956932 - 13957052
Alignment:
Q  46 tagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaat 145  Q
    |||||||||||||||| | | ||||| ||| ||||  |||| || |||| |  |||||||||  ||||| ||  ||| |||||||||||||| ||| ||     
T  13956932 tagttttaaaactcggctcggtcatcgactcggcataggtactgggtcaatgagttaatggtcgaaccactgagtcactggttgaaccgcatgactgaac 13957031  T
Q  146 tggattaaatcgaataactcg 166  Q
     |||||||| |||||||||||    
T  13957032 cggattaaaccgaataactcg 13957052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 164
Target Start/End: Complemental strand, 32493291 - 32493168
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| |||| |||||||| |||| |  |||||||||  ||||| |||||||||||||||||||||| ||    
T  32493291 aagcatagttttaaaactcggctcggtcatcgactcggcatgggtattgggtcagtgagttaatggtcgaaccactggatcattggttgaaccgcatgac 32493192  T
Q  141 taaattggattaaatcgaataact 164  Q
    | ||  | |||||| |||||||||    
T  32493191 tgaaccgaattaaaccgaataact 32493168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 8015027 - 8014901
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||  ||| ||| |||||| |  |||||| | | ||||||  ||||| ||  |||||||| ||||||||||||    
T  8015027 aagcatagttttaaaactcggctcggtcattgactcggcgggggtactaggtcactggatcaatggtcgaaccagtgagtcattggtcgaaccgcataac 8014928  T
Q  141 taaattggattaaatcgaataactcgg 167  Q
    | ||| |||||||| || |||||||||    
T  8014927 tgaatcggattaaaccggataactcgg 8014901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 36833901 - 36834039
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| ||| |||||||||| || |||| | ||| ||||||  ||||| || ||||||| | ||||||||| ||    
T  36833901 aagcatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtcattgggtcaatggtcgaaccactgaatcattgatcgaaccgcatgac 36834000  T
Q  141 taaattggattaaatcgaataactcggtttgatgactcg 179  Q
    | ||  |||| || |||||| |||| ||| ||| |||||    
T  36834001 tgaaccggatcaactcgaatgactcagttagataactcg 36834039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 188
Target Start/End: Complemental strand, 28761761 - 28761640
Alignment:
Q  67 tcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcg 166  Q
    ||||| ||| |||||||||| || || | | ||| ||||||  ||||| ||  ||| |||||||||||||| ||| ||| |||||||| || ||||||||    
T  28761761 tcatcgactcggcaggggtactgggttattgggtcaatggtcgaaccactgagtcactggttgaaccgcatgactgaatcggattaaaccggataactcg 28761662  T
Q  167 gtttgatgactcggccttaaga 188  Q
    ||| | |||||||| |||||||    
T  28761661 gttaggtgactcggtcttaaga 28761640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 31008638 - 31008545
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||| |||||| | ||||| ||| ||| |||||| ||||||| | ||| ||||||  ||||| ||  |||||||| |||||||||    
T  31008638 catagttttaaaattcggttcggtcatcgactcggcgggggtactgagtcaatgggtcaatggtcgaaccagtgagtcattggtcgaaccgcat 31008545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 20821899 - 20821775
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    ||||||||||||||| || |||  |||| ||| |||| || || ||||||||| ||||||||||  ||||| ||  |||   |||||||||||||||| |    
T  20821899 catagttttaaaacttggcttggccatcgactcggcaaggatactgagtcactgggttaatggtcgaaccactgagtcacctgttgaaccgcataactga 20821800  T
Q  144 attggattaaatcgaataactcggt 168  Q
    |  |||||| |||| || |||||||    
T  20821799 accggattagatcggatgactcggt 20821775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 42063459 - 42063555
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||||||||||| | | ||||| ||| ||| |||||| || |||| | ||| ||||||  ||||| ||  |||||||| |||||||||    
T  42063459 aagcatagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcat 42063555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 179
Target Start/End: Original strand, 6817290 - 6817425
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| || | ||||| || |||| | ||||||||||  ||||| ||  ||| ||||||||||||||||||||    
T  6817290 catagttttaaaactcggctcggtcatcgactcggtaagggtactgggtcattgggttaatggtcgaaccactgagtcactggttgaaccgcataactaa 6817389  T
Q  144 attggattaaatcgaataactcggtttgatgactcg 179  Q
    || |||||||| ||||||| |||| | |||||||||    
T  6817390 atcggattaaaccgaataattcggctagatgactcg 6817425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 23595689 - 23595840
Alignment:
Q  42 agcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataact 141  Q
    |||||||||||||||||||| | | | ||| ||| |||||||||| || |||||| |||| |||||  ||||| ||  |||||||||||||||||| | |    
T  23595689 agcatagttttaaaactcggctcggtgatcgactcggcaggggtactgggtcactgggttgatggtcgaaccactgagtcattggttgaaccgcatgatt 23595788  T
Q  142 aaattggattaaatcgaataactcggtttgatgactcggccttaagaataat 193  Q
    |||| |||||||| | |||||||||| | |||||| |||  |||||| ||||    
T  23595789 aaatcggattaaaccaaataactcggctagatgacccggttttaagattaat 23595840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 35166125 - 35166055
Alignment:
Q  99 gttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtt 169  Q
    |||| ||||| ||||| |||||||||||||||||||||||||| || || ||||||||| |||||||||||    
T  35166125 gttattggttgaaccactggatcattggttgaaccgcataactgaactgtattaaatcggataactcggtt 35166055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 31513474 - 31513351
Alignment:
Q  46 tagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaat 145  Q
    |||||||||||||||| | |  |||  ||| || ||||||| ||||||| | ||| ||||||| ||||||||| |||||||| ||||||||| ||||||     
T  31513474 tagttttaaaactcggctcggacattgactcggaaggggtactgagtcaatgggtcaatggttgaaccattgggtcattggtcgaaccgcatgactaaac 31513375  T
Q  146 tggattaaatcgaataactcggtt 169  Q
     |||| || ||| || ||||||||    
T  31513374 cggatcaactcggatgactcggtt 31513351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 29419864 - 29419728
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataacta 142  Q
    ||||||||||||||||||| | | ||||| ||| |||||||||| || ||||        ||||| |||||| ||  ||| |||||||||||||| |||     
T  29419864 gcatagttttaaaactcggctcggtcatcgactcggcaggggtactgggtca--------atggtcaaaccactgagtcactggttgaaccgcatgactg 29419773  T
Q  143 aattggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    ||| |||||||| || ||||||||||| | |||||||| |||||||    
T  29419772 aatcggattaaa-cggataactcggttaggtgactcggtcttaaga 29419728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 24068301 - 24068207
Alignment:
Q  43 gcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||||||||| | | ||||| ||| ||| ||||||||| |||| | ||| ||||||  ||||| ||  |||||||| |||||||||    
T  24068301 gcatagttttaaaactcggctcggtcatcgactcggcgggggtattgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcat 24068207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 33628360 - 33628226
Alignment:
Q  46 tagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaat 145  Q
    |||||||||||||||| | |  |||  ||| |||||||||| ||||||||| ||| ||||||| ||||||||| |||||||| ||||||||| ||||||     
T  33628360 tagttttaaaactcggctcggacattgactcggcaggggtactgagtcactgggtcaatggttgaaccattgggtcattggtcgaaccgcatgactaaac 33628261  T
Q  146 tggattaaatcgaataactcggtttgatgactcgg 180  Q
     |||| || ||| || |||||||| ||| ||||||    
T  33628260 cggatcaactcggatgactcggttggataactcgg 33628226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 34192011 - 34191857
Alignment:
Q  39 ggaagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcata 138  Q
    ||||||||||||||||||||||| | | | ||| |||  ||||||||| ||  ||||| |||| |||||  ||||| ||  ||||||||||||||||||     
T  34192011 ggaagcatagttttaaaactcggctcggtgatcgactctgcaggggtactggatcactgggttgatggtcgaaccactgagtcattggttgaaccgcatg 34191912  T
Q  139 actaaattggattaaatcgaataactcggtttgatgactcggccttaagaataat 193  Q
    ||||||| |||||||| | |||||||||| | |||||| |||  |||||| ||||    
T  34191911 actaaatcggattaaaccaaataactcggctagatgacccggttttaagattaat 34191857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 45269553 - 45269430
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| ||| | |||| || |||||| ||| ||||||  ||||| ||  |||||||| ||||||||||||| |    
T  45269553 catagttttaaaactcggctcggtcatcgactcggcggaggtactgggtcactgggtcaatggtcgaaccagtgagtcattggtcgaaccgcataactga 45269454  T
Q  144 attggattaaatcgaataactcgg 167  Q
    || |||||||| || |||||||||    
T  45269453 atcggattaaaccggataactcgg 45269430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 188
Target Start/End: Original strand, 46170641 - 46170785
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    ||||||||||||| |||| | | ||||| ||| |||||||  | || |||| | ||||||||||  ||||| ||  ||| |||| ||||||||| | | |    
T  46170641 catagttttaaaattcggctcggtcatcgactcggcagggacactgggtcattgggttaatggtcgaaccactgagtcaatggtcgaaccgcatgaatga 46170740  T
Q  144 attggattaaatcgaataactcggtttgatgactcggccttaaga 188  Q
    |  |||| ||| |||||||||||||| ||||||||||||||||||    
T  46170741 accggatcaaaccgaataactcggttagatgactcggccttaaga 46170785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 9822519 - 9822642
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| | | ||| ||||||||| ||||||  || ||||||  ||||| ||  |||||||| ||||||||||||| |    
T  9822519 catagttttaaaactcggctcgatcatcgattcggcgggggtattgggtcactgagtcaatggtcgaaccagtgagtcattggtcgaaccgcataactga 9822618  T
Q  144 attggattaaatcgaataactcgg 167  Q
    |  |||||||| || |||||||||    
T  9822619 accggattaaaccggataactcgg 9822642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 10724444 - 10724567
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| | | ||| ||||||||| ||||||  || ||||||  ||||| ||  |||||||| ||||||||||||| |    
T  10724444 catagttttaaaactcggctcgatcatcgattcggcgggggtattgggtcactgagtcaatggtcgaaccagtgagtcattggtcgaaccgcataactga 10724543  T
Q  144 attggattaaatcgaataactcgg 167  Q
    |  |||||||| || |||||||||    
T  10724544 accggattaaaccggataactcgg 10724567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 10198308 - 10198442
Alignment:
Q  45 atagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaa 144  Q
    ||||||||||||||||| | | ||||| ||| |||||||||||||  ||||| ||| ||||||  ||||| ||  |||||||| ||||||||| ||| ||    
T  10198308 atagttttaaaactcggctcggtcatcgactcggcaggggtattggatcactgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactgaa 10198407  T
Q  145 ttggattaaatcgaataactcggtttgatgactcg 179  Q
      |||| || ||| || |||||||| ||| |||||    
T  10198408 ccggatcaactcggatgactcggttagataactcg 10198442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 33610636 - 33610725
Alignment:
Q  90 agtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcggtttgatgactcg 179  Q
    |||||||  |||||||||  ||||| ||  |||||||||||||||||| ||| |||  ||||||| | |||||||||||| |||||||||    
T  33610636 agtcactgagttaatggtcgaaccactgagtcattggttgaaccgcatgactgaatcagattaaaccaaataactcggttagatgactcg 33610725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 20131456 - 20131356
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    ||||||||||||||||| || |  |||  | | ||||||| |||||||||||| ||| |||||||||| |||||| |||||| | || |||||| |||||    
T  20131456 catagttttaaaactcgattcggacattgattcggcagggttattgagtcactgggtcaatggttaaatcattgggtcattgatcgatccgcatgactaa 20131357  T
Q  144 a 144  Q
    |    
T  20131356 a 20131356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 34259377 - 34259253
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | || || ||| |||| |||||||  |||| |  |||||||||  ||||| ||  ||| |||||||||||||| ||| |    
T  34259377 catagttttaaaactcggctcggtcgtcgactcggcatgggtattaggtcaatgagttaatggtcgaaccactgagtcactggttgaaccgcatgactga 34259278  T
Q  144 attggattaaatcgaataactcggt 168  Q
    || | ||||||||| ||||||||||    
T  34259277 atcgaattaaatcggataactcggt 34259253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 16217111 - 16216974
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataac 140  Q
    ||||||||||||||||||||| | | ||||| |||  ||| |||||||| |||||| ||| ||||||  ||||| ||  |||||||| ||||| ||| ||    
T  16217111 aagcatagttttaaaactcggctcggtcatcgactcagcatgggtattgggtcactgggtcaatggtcgaaccactgagtcattggtcgaaccacatgac 16217012  T
Q  141 taaattggattaaatcgaataactcggtttgatgactc 178  Q
    | ||  |||| || ||| || |||||||| ||| ||||    
T  16217011 tgaaccggatcaactcggatgactcggttagataactc 16216974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 24096823 - 24096730
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||||||| | ||||| | | |||||||||| || |||||| | | ||||||  ||||| ||  |||||||| |||||||||    
T  24096823 catagttttaaaactcggttcggtcatcgattcggcaggggtactgggtcactggatcaatggtcgaaccactgagtcattggtcgaaccgcat 24096730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 11734345 - 11734209
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| ||| |||||| || |||| | ||| ||||||  ||||| ||  |||||||| ||||||||| ||| |    
T  11734345 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactga 11734246  T
Q  144 attggattaaatcgaataactcggtttgatgactcgg 180  Q
    || |||   | ||| ||||||||||| ||| ||||||    
T  11734245 atcggaaccactcggataactcggttagataactcgg 11734209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 25069374 - 25069434
Alignment:
Q  120 tcattggttgaaccgcataactaaattggattaaatcgaataactcggtttgatgactcgg 180  Q
    |||||||||||||||||| ||| ||  | ||||||||| |||||||||||  |||||||||    
T  25069374 tcattggttgaaccgcatgactgaaccgtattaaatcggataactcggttgtatgactcgg 25069434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 45340299 - 45340355
Alignment:
Q  110 aaccattggatcattggttgaaccgcataactaaattggattaaatcgaataactcg 166  Q
    ||||||||||||||| || ||||| ||| ||||||| | |||||||||||| |||||    
T  45340299 aaccattggatcattagtcgaaccacatgactaaatcgaattaaatcgaatgactcg 45340355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 17955 - 17862
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    |||||||||||||||| | | |  |||  ||| |||||||||| ||||||| | ||||||||||  ||||||||  ||||||||||||||||||    
T  17955 catagttttaaaactcagctcgaccattcactcggcaggggtactgagtcattgggttaatggtcgaaccattgagtcattggttgaaccgcat 17862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 7836 - 7932
Alignment:
Q  41 aagcatagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcat 137  Q
    ||||||||||||||||||||| | | ||||| ||| ||||  |||| ||||||| | ||||||||||  ||||| ||  || |||||||||||||||    
T  7836 aagcatagttttaaaactcggctcggtcatcgactcggcaaaggtactgagtcattgggttaatggtcgaaccactgagtcgttggttgaaccgcat 7932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 11136 - 11035
Alignment:
Q  44 catagttttaaaactcggtttgttcatcaactaggcaggggtattgagtcactaggttaatggttaaaccattggatcattggttgaaccgcataactaa 143  Q
    |||||||||||||||||| | | ||||| ||| ||| |||||| || |||| | ||| ||||||  ||||| ||  |||||||| ||||||||| |||||    
T  11136 catagttttaaaactcggctcggtcatcgactcggcgggggtactgggtcaatgggtcaatggtcgaaccactgagtcattggtcgaaccgcatgactaa 11037  T
Q  144 at 145  Q
    ||    
T  11036 at 11035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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