View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21107_low_1 (Length: 1089)
Name: NF21107_low_1
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_1 |
 | |
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| [»] scaffold0137 (2 HSPs) |
| | |
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Alignment Details
Target: scaffold0137 (Bit Score: 791; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 14 - 895
Target Start/End: Original strand, 4076 - 4953
Alignment:
| Q |
14 |
cacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4076 |
cacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaa |
4175 |
T |
|
| Q |
114 |
ttaacacttatatggaatgactaaaagtctaaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctcaatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
4176 |
ttaacacttatatggaatgactaaaa--------tgacatctccttcagaggaagaatacaccccgtctgtcaacctatatggaatatcagtgctcaatg |
4267 |
T |
|
| Q |
212 |
ctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaa |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4268 |
ctcgtctagctggtcctgcatgaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatcaaaa |
4367 |
T |
|
| Q |
312 |
tgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtct |
411 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4368 |
tgctttgacgtgatgattattgtatagacattttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtct |
4467 |
T |
|
| Q |
412 |
ttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4468 |
ttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaacat |
4567 |
T |
|
| Q |
512 |
gaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgc--aatattattaattttctcaaa |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4568 |
gaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcacctacacatataattacatgcttaatattattaattttctcaaa |
4667 |
T |
|
| Q |
610 |
ctattatcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccc |
709 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4668 |
ctattatcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccc |
4767 |
T |
|
| Q |
710 |
tcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaa |
809 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4768 |
tcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaa |
4867 |
T |
|
| Q |
810 |
aaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
895 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
4868 |
aaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 989 - 1073
Target Start/End: Original strand, 5044 - 5128
Alignment:
| Q |
989 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
1073 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
5128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 789; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 14 - 895
Target Start/End: Original strand, 3896411 - 3897297
Alignment:
| Q |
14 |
cacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaagatggacctaatgagggtgattcttaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3896411 |
cacctacaacactgaaaccaacaacaaaaagaccatccctgtcctcctagctaatgactaaaatcaaaagcaaaatggacctaatgagggtgattcttaa |
3896510 |
T |
|
| Q |
114 |
ttaacacttatatggaatgactaaaa-gtc--taaaatgacatctccttcagaggaagaatacacc--gtccgtcaacctatatggaatatcagtgctca |
208 |
Q |
| |
|
||| ||||||||||||||||||||| | | | | | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
3896511 |
ataatacttatatggaatgactaaaatgacattcatagcacatctccttcagaggaagaatacaccccgtccgtcaacctatatggaatatcagtgctca |
3896610 |
T |
|
| Q |
209 |
atgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatattataaagagaccaatgattattaatca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3896611 |
atgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaactttggataatattataaagagatcaatgattattaatca |
3896710 |
T |
|
| Q |
309 |
aaatgctttgacgtgatgattatggtatagacattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctg |
408 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896711 |
aaatgctttgacgtgatgattattgtatagacattttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctg |
3896810 |
T |
|
| Q |
409 |
tctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896811 |
tctttgtagtattcatctcccaatttgagctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaa |
3896910 |
T |
|
| Q |
509 |
catgaacagaaaagagagacacataaagcatttgataagaataggcctttgttcattcaccgacacatataattacatgcaatattattaattttctcaa |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896911 |
catgaacagaaaagagagacacataaagcatttgataagaataggtctttgttcattcaccgacacatataattacatgcaatattattaattttctcaa |
3897010 |
T |
|
| Q |
609 |
actattatcattgttgacgtgtccgtgcttcatagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatcc |
708 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897011 |
actattatcattgttgacgtatccgtgcttcatagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatcc |
3897110 |
T |
|
| Q |
709 |
ctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataataga |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897111 |
ctcatagtcattgcaaaacaaacaaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataataga |
3897210 |
T |
|
| Q |
809 |
aaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
895 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3897211 |
aaaccgagaaattcaaagccaaacccaatcttataggatgagaagatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 989 - 1073
Target Start/End: Original strand, 3898713 - 3898797
Alignment:
| Q |
989 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
1073 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttg |
3898797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 732 - 881
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
732 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
831 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
|
| Q |
832 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
881 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | |||||||||||| |
|
|
| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 989 - 1070
Target Start/End: Complemental strand, 46283571 - 46283490
Alignment:
| Q |
989 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacct |
1070 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacct |
46283490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 206 - 320
Target Start/End: Complemental strand, 46285347 - 46285233
Alignment:
| Q |
206 |
tcaatgctcgtctagctggtcctgcaagaagccaaatatagctttaacttagattatgatcaacttgggataatatta--taaagagaccaatgattatt |
303 |
Q |
| |
|
|||| |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||||||||| |||| ||||||| | ||||||||||||||||| |
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|
| T |
46285347 |
tcaaggctcatctagctggtcctgc-agaatccaaatatagc-ttaactcagattatgatcaatttggagcaatattaggaagagagaccaatgattatt |
46285250 |
T |
|
| Q |
304 |
aatcaaaatgctttgac |
320 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
46285249 |
aattaaaatgctttgac |
46285233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 339 - 492
Target Start/End: Complemental strand, 46285194 - 46285038
Alignment:
| Q |
339 |
acattttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg--- |
435 |
Q |
| |
|
|||||||||| | ||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || |
|
|
| T |
46285194 |
acattttacctggacatcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtcc |
46285095 |
T |
|
| Q |
436 |
agctcattacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
492 |
Q |
| |
|
|| ||| | |||||| || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
46285094 |
agttcagcaattgcttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 799 - 836
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
799 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
836 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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