View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21107_low_10 (Length: 498)

Name: NF21107_low_10
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21107_low_10
NF21107_low_10
[»] chr7 (4 HSPs)
chr7 (6-480)||(15932659-15933133)
chr7 (6-480)||(15941001-15941475)
chr7 (308-482)||(7157656-7157829)
chr7 (310-473)||(47921831-47921994)
[»] chr4 (3 HSPs)
chr4 (6-482)||(11164089-11164571)
chr4 (332-475)||(50881662-50881807)
chr4 (308-438)||(16635662-16635792)
[»] chr5 (4 HSPs)
chr5 (6-482)||(34657077-34657565)
chr5 (332-480)||(20934269-20934417)
chr5 (340-417)||(19183853-19183930)
chr5 (334-449)||(31232256-31232370)
[»] chr3 (4 HSPs)
chr3 (345-480)||(11177718-11177853)
chr3 (315-460)||(23046572-23046717)
chr3 (403-439)||(3793419-3793455)
chr3 (403-439)||(3831604-3831640)
[»] chr8 (1 HSPs)
chr8 (332-480)||(19901798-19901946)
[»] scaffold1661 (1 HSPs)
scaffold1661 (354-480)||(153-279)
[»] scaffold0029 (2 HSPs)
scaffold0029 (354-480)||(88643-88769)
scaffold0029 (308-393)||(77047-77131)
[»] scaffold1407 (1 HSPs)
scaffold1407 (239-415)||(1239-1415)
[»] scaffold0453 (1 HSPs)
scaffold0453 (317-460)||(9609-9752)
[»] scaffold0226 (1 HSPs)
scaffold0226 (332-482)||(3518-3668)
[»] scaffold0177 (1 HSPs)
scaffold0177 (239-415)||(32430-32609)
[»] scaffold0059 (1 HSPs)
scaffold0059 (358-484)||(39161-39287)
[»] scaffold0334 (1 HSPs)
scaffold0334 (308-460)||(16134-16286)
[»] chr2 (1 HSPs)
chr2 (332-457)||(23689284-23689409)
[»] chr1 (2 HSPs)
chr1 (354-439)||(17951072-17951157)
chr1 (308-383)||(7589056-7589131)
[»] scaffold0267 (1 HSPs)
scaffold0267 (403-439)||(8367-8403)


Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 6 - 480
Target Start/End: Complemental strand, 15933133 - 15932659
Alignment:
Q  6 agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15933133 agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 15933034  T
Q  106 atagactcacggcttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15933033 atagactcacggcttgagttatagcaaggtaggtagcaacatggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 15932934  T
Q  206 caggaactagcaattgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatta 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15932933 caggaactagcaattgaaatagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatta 15932834  T
Q  306 cgataagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagt 405  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15932833 cgataagcagtttctaaataacacagtttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagt 15932734  T
Q  406 gcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaat 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15932733 gcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaat 15932659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 6 - 480
Target Start/End: Complemental strand, 15941475 - 15941001
Alignment:
Q  6 agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15941475 agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 15941376  T
Q  106 atagactcacggcttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15941375 atagactcacggcttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaagttggaatgaaaaaggaatgatgaaaa 15941276  T
Q  206 caggaactagcaattgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatta 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  15941275 caggaactagcaattgaaatagttacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatta 15941176  T
Q  306 cgataagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagt 405  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15941175 cgataagcagtttctaaataacacagtttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagt 15941076  T
Q  406 gcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaat 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15941075 gcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaat 15941001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 308 - 482
Target Start/End: Complemental strand, 7157829 - 7157656
Alignment:
Q  308 ataagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgc 407  Q
    |||||| | |||||||||||| | ||||||||| || |||||||||||  |||||||||| | ||||| ||||||||||   |||||||| |||||||||    
T  7157829 ataagcggattctaaataacaaaatttctctctgaaaagcttggtgtccacaactgagttttccaggtttatttataggttgaaatctgc-ctgaagtgc 7157731  T
Q  408 ttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaattg 482  Q
     ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||    
T  7157730 gtctgatcatgtctcaagtagtggagaaaacgaaggaagtgggcaaactgcttctgaaaagtggggaaagaattg 7157656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 310 - 473
Target Start/End: Original strand, 47921831 - 47921994
Alignment:
Q  310 aagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgctt 409  Q
    |||||||||||||||  |  | ||| |||||| | |||||||||||  ||| |||||| | ||||| ||||||||||   |||||||| |||||||||||    
T  47921831 aagcagtttctaaattgctgaatttatctctataaagcttggtgtccacaagtgagttttccaggtttatttataggctgaaatctgccctgaagtgctt 47921930  T
Q  410 ctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgacacgtgggg 473  Q
    |||||||||||| |||||||||| ||||||| | |||||||||||| |||||||| ||||||||    
T  47921931 ctgatcatgtcttaagtagtggaaaaaatgatggaagtgggcaaacggcttctgaaacgtgggg 47921994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Complemental strand, 11164571 - 11164089
Alignment:
Q  6 agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11164571 agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacacaacaat 11164472  T
Q  106 atagactcacggcttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 205  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11164471 atagactcatggcttgagttaaagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 11164372  T
Q  206 caggaactagcaattgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatta 305  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11164371 caggaactagaaattgaaatagttacttaattcaaaattgcaattaagaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatta 11164272  T
Q  306 cgataag-------cagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgct 398  Q
    |||||||       |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11164271 cgataagcaataatcagtttctaaataacacaatttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgct 11164172  T
Q  399 ctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaattg 482  Q
    |||||||||||||||||||||  | |||||||||||||||| || ||||| | ||||||||| | | |||| ||||||||||||    
T  11164171 ctgaagtgcttctgatcatgttcctagtagtggagaaaatggaggaagtgagaaaactgcttttcaaacgt-gggaaagaattg 11164089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 332 - 475
Target Start/End: Original strand, 50881662 - 50881807
Alignment:
Q  332 tttctctctaaaga-gcttggtgtcttcaactgagttcttcaggtctatttatagggaaaa-atctgctctgaagtgcttctgatcatgtctcaagtagt 429  Q
    |||||||||||| | |||||||| ||||||||||||  || ||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||| ||    
T  50881662 tttctctctaaaaatgcttggtgccttcaactgagtctttaaggtctatttataggcaaaaaatctgctttgaagtgcctctgatcatgtctcaagtggt 50881761  T
Q  430 ggagaaaatgaagaaagtgggcaaactgcttctgacacgtggggaa 475  Q
    ||||||||||  | || || || ||||| |||||| ||||||||||    
T  50881762 ggagaaaatgttggaattgagccaactgattctgaaacgtggggaa 50881807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 308 - 438
Target Start/End: Complemental strand, 16635792 - 16635662
Alignment:
Q  308 ataagcagtttctaaataacacagtttctctctaaaga-gcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtg 406  Q
    |||||| ||||||||||  |  |||||||||||||| | ||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||    
T  16635792 ataagcggtttctaaattgctaagtttctctctaaaaaagcttggtgtcttcaactgaattctttaggtctatttata-ggaaaaatcggctctgaaatg 16635694  T
Q  407 cttctgatcatg-tctcaagtagtggagaaaat 438  Q
    |||||||||||| |||| |||||||||||||||    
T  16635693 cttctgatcatgttctc-agtagtggagaaaat 16635662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 482
Target Start/End: Complemental strand, 34657565 - 34657077
Alignment:
Q  6 agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34657565 agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacagcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat 34657466  T
Q  106 atagactcacggcttgagttatagcaaggtaggtagcaacacggcaattggaaaatatggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 205  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34657465 atagactcacggcttgagttaaagcaaggtaggtagcaacacggcaattggaaaatacggcaagaaaaactaaattggaatgaaaaaggaatgatgaaaa 34657366  T
Q  206 caggaactagcaattgaaatagttacttaattcaaaattgcaattaacaaaggttctgaatttgtaaaattgtacgatagctaaacaaaagcttaaatta 305  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34657365 caggaactagaaattgaaatagtaacttaattcaaaattgcaattaacaaaggttctgaaattgtaaaattgtacgatagctaaacaaaagcttaaatta 34657266  T
Q  306 cgata-------------agcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaa 392  Q
    |||||             |||||||||||||||||||| |||||||||||| |||||||||||  |||||||||| | ||||| ||||||||||   |||    
T  34657265 cgataagcaataaaaataagcagtttctaaataacacaatttctctctaaaaagcttggtgtccacaactgagttttccaggtttatttataggctgaaa 34657166  T
Q  393 tctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaattg 482  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  34657165 tctgc-ctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaaggaagtgggcaaactgcttctgaaacgtggggaaagaattg 34657077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 332 - 480
Target Start/End: Original strand, 20934269 - 20934417
Alignment:
Q  332 tttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtgg 431  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  20934269 tttctctctaaaatgcttggtgtattcaactgagttcttcaggtctatttatagagaaaaatctgctctgaagtgcttctgatcatatctcaagtagtgg 20934368  T
Q  432 agaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaat 480  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20934369 agaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaat 20934417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 19183930 - 19183853
Alignment:
Q  340 taaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcat 417  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  19183930 taaaaagcttggtgtcttcaactgagttcttcaggtttatttatggggaaaaatctgctctgaagtgcttctggtcat 19183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 334 - 449
Target Start/End: Complemental strand, 31232370 - 31232256
Alignment:
Q  334 tctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaa-tctgctctgaagtgcttctgatcatgtctcaagtagtgga 432  Q
    ||||| |||| ||||||||| ||||||||||||| || || | |||||||||| ||||| | |||||||| |||||||||||||  || |||| ||||||    
T  31232370 tctctttaaaaagcttggtgccttcaactgagtttttaagtt-tatttataggcaaaaaatatgctctga-gtgcttctgatcacatcccaagcagtgga 31232273  T
Q  433 gaaaatgaagaaagtgg 449  Q
    |||||||||| ||||||    
T  31232272 gaaaatgaaggaagtgg 31232256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 345 - 480
Target Start/End: Original strand, 11177718 - 11177853
Alignment:
Q  345 agcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaa 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11177718 agcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaa 11177817  T
Q  445 agtgggcaaactgcttctgacacgtggggaaagaat 480  Q
    |||||||||||||||||||| |||||||||||||||    
T  11177818 agtgggcaaactgcttctgaaacgtggggaaagaat 11177853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 315 - 460
Target Start/End: Complemental strand, 23046717 - 23046572
Alignment:
Q  315 gtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgat 414  Q
    |||||||||||||  | | |||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||    
T  23046717 gtttctaaataactgaatctctctctaatatgcttggtgtcttcaactgagttcttcaggtttatttatagggaaaaatctgctctcaagtgttcctgat 23046618  T
Q  415 catg-tctcaagtagtggagaaaatgaagaaagtgggcaaactgctt 460  Q
    |||| ||||||  ||||||||||||| || ||||| | |||||||||    
T  23046617 catgttctcaa-cagtggagaaaatggaggaagtgagaaaactgctt 23046572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 3793419 - 3793455
Alignment:
Q  403 agtgcttctgatcatgtctcaagtagtggagaaaatg 439  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3793419 agtgcttctgatcatgtctcaagaggtggagaaaatg 3793455  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 3831604 - 3831640
Alignment:
Q  403 agtgcttctgatcatgtctcaagtagtggagaaaatg 439  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3831604 agtgcttctgatcatgtctcaagaggtggagaaaatg 3831640  T

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Target: chr8 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 332 - 480
Target Start/End: Original strand, 19901798 - 19901946
Alignment:
Q  332 tttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtgg 431  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19901798 tttctctctaaaatgcttggtgtattcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttccgatcatgtctcaagtagtgg 19901897  T
Q  432 agaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaat 480  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  19901898 agaaaatgaagaaagtgggcaaactgcttctaaaacgtggggaaagaat 19901946  T

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Target: scaffold1661 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold1661
Description:

Target: scaffold1661; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 354 - 480
Target Start/End: Original strand, 153 - 279
Alignment:
Q  354 tcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  153 tcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaa 252  T
Q  454 actgcttctgacacgtggggaaagaat 480  Q
    ||||||||||| ||||||| |||||||    
T  253 actgcttctgaaacgtgggaaaagaat 279  T

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Target: scaffold0029 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 354 - 480
Target Start/End: Original strand, 88643 - 88769
Alignment:
Q  354 tcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaa 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88643 tcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaa 88742  T
Q  454 actgcttctgacacgtggggaaagaat 480  Q
    ||||||||||| ||||||| |||||||    
T  88743 actgcttctgaaacgtgggaaaagaat 88769  T

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Target: scaffold0029; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 393
Target Start/End: Original strand, 77047 - 77131
Alignment:
Q  308 ataagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaat 393  Q
    |||||||| |||||||||||| | ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  77047 ataagcagattctaaataacaaaatttctctctgaaaagcttgg-gtcttcaactgagttcttcaggtctatttatagggaaaaat 77131  T

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Target: scaffold1407 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 239 - 415
Target Start/End: Original strand, 1239 - 1415
Alignment:
Q  239 aaaattgcaattaacaaaggttctgaatttgtaa-aattgtacgatagctaaacaaaagcttaaattacgataagcagtttctaaataacacagtttctc 337  Q
    |||||||||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  1239 aaaattgcaattcacaaaggttctgaagttgtaagaattgtatgatagctaaacaaaagcttgaattac-ataagcagtttctaaataacacagtttctc 1337  T
Q  338 tctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatc 415  Q
    |||||| ||||||     |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1338 tctaaaaagcttgcccctttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 1415  T

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Target: scaffold0453 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 317 - 460
Target Start/End: Complemental strand, 9752 - 9609
Alignment:
Q  317 ttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatca 416  Q
    |||||||||||| | ||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  9752 ttctaaataacaaaatttctctctgaaaagcttggtgtcatcaactgagttcttcaagtctatttatagggaaaaatctgctttgaagtgcttctgatca 9653  T
Q  417 tgtctcaagtagtggagaaaatgaagaaagtgggcaaactgctt 460  Q
    |||  | |||||||||||||||| || ||||| | |||||||||    
T  9652 tgttcctagtagtggagaaaatggaggaagtgagaaaactgctt 9609  T

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Target: scaffold0226 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 332 - 482
Target Start/End: Complemental strand, 3668 - 3518
Alignment:
Q  332 tttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtgg 431  Q
    ||||||||||||  ||||||| |   |||||||||| | ||||| ||||||||||   |||||||| |||||||||||||||||||||||||||||||||    
T  3668 tttctctctaaaatgcttggtattcacaactgagttttccaggtttatttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagtagtgg 3569  T
Q  432 agaaaatgaagaaagtgggcaaactgcttctgacacgtggggaaagaattg 482  Q
    |||||||| || ||||||||||||||||||||| | |||||||||||||||    
T  3568 agaaaatggaggaagtgggcaaactgcttctgaaatgtggggaaagaattg 3518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 239 - 415
Target Start/End: Complemental strand, 32609 - 32430
Alignment:
Q  239 aaaattgcaattaacaaaggttctgaatttgtaaa-attgtacgatagctaaac--aaaagcttaaattacgataagcagttt-ctaaataacacagttt 334  Q
    |||||||||||| |||||| ||||||| ||||||  |||||||||||||||||   |||||||| |||||| ||||||||||| ||||||| ||||||||    
T  32609 aaaattgcaattcacaaagattctgaagttgtaaggattgtacgatagctaaaacaaaaagcttgaattac-ataagcagttttctaaatagcacagttt 32511  T
Q  335 ctctctaaagagcttggtgtcttcaa-ctgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatc 415  Q
    ||||||||| |||||  | |||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32510 ctctctaaa-agcttcttttcttctttctgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 32430  T

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Target: scaffold0059 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 358 - 484
Target Start/End: Original strand, 39161 - 39287
Alignment:
Q  358 caactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactg 457  Q
    |||||||||| | || || ||||||||||   |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  39161 caactgagttttccaagtttatttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagtagtggagaaaatggaggaagtgggcaaactg 39260  T
Q  458 cttctgacacgtggggaaagaattgat 484  Q
    ||||||| | |||||||||||||||||    
T  39261 cttctgaaatgtggggaaagaattgat 39287  T

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Target: scaffold0334 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 308 - 460
Target Start/End: Complemental strand, 16286 - 16134
Alignment:
Q  308 ataagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgc 407  Q
    |||| |||||||||||| ||  | ||||| | || | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  16286 ataatcagtttctaaatcactaaatttctttgtataaagcttggtgtcatcaactgagttcttcaggtctatttatagagaaaaatctgctttgaagtgc 16187  T
Q  408 ttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgctt 460  Q
    ||||||||||||  | |||||||||||||||| || ||||| | |||||||||    
T  16186 ttctgatcatgttcctagtagtggagaaaatggagcaagtgagaaaactgctt 16134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 332 - 457
Target Start/End: Complemental strand, 23689409 - 23689284
Alignment:
Q  332 tttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtgg 431  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||  |||||||| ||||||||||    
T  23689409 tttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttcatatcatgtcccaagtagtgg 23689310  T
Q  432 agaaaatgaagaaagtgggcaaactg 457  Q
    |||| ||| || ||||| | ||||||    
T  23689309 agaatatggaggaagtgagaaaactg 23689284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 439
Target Start/End: Original strand, 17951072 - 17951157
Alignment:
Q  354 tcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatg 439  Q
    |||||||||||||| |  |||| ||||||||||  |||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  17951072 tcttcaactgagttttcaaggtttatttataggataaaattggctctgaagtgcttctgatcatgtcccaagtagtggagaaaatg 17951157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 7589056 - 7589131
Alignment:
Q  308 ataagcagtttctaaataacacagtttctctctaaagagcttggtgtcttcaactgagttcttcaggtctatttat 383  Q
    |||||| ||||||||||  |  |||||||||||| | ||||||||| |||||| ||||||||||| ||||||||||    
T  7589056 ataagcggtttctaaattgctaagtttctctctagaaagcttggtgccttcaaatgagttcttcatgtctatttat 7589131  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 8367 - 8403
Alignment:
Q  403 agtgcttctgatcatgtctcaagtagtggagaaaatg 439  Q
    |||||||||||||||||||||||  ||||||||||||    
T  8367 agtgcttctgatcatgtctcaagaggtggagaaaatg 8403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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