View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_11 (Length: 461)
Name: NF21107_low_11
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 120 - 442
Target Start/End: Original strand, 12084305 - 12084630
Alignment:
| Q |
120 |
acacacataattagagaggtgtccgtgcttcattagctctgaataagtagatgaatctttcacacctcaaaatatcaattggaatatttcaatatttaca |
219 |
Q |
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| T |
12084305 |
acacacataatctaagaggtgtccgtgcttcattagctcggaataagtaaatgaatctttcacacctcaaaatatcaattggaatatatcaatatttaca |
12084404 |
T |
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| Q |
220 |
tctgaaaaatgtaaatttgtattgtttgaaactacatttctaaatgtaacactttagaaatgtaatgtaaggaaatttggtccccga-aaaattag---a |
315 |
Q |
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| T |
12084405 |
tctgaaaaatgtaaatttgtattgtttgaaagtacatttctaaatgtaacactttagaaatgtaatgtaaggaaatttggtcccctacaaaattagaaca |
12084504 |
T |
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| Q |
316 |
aaatttggatactaaattaacctttctgcagtgaaatatttcaaccactgcctgcttcaatttctgtggtgaaaagaacaaaataaaatattcatagtta |
415 |
Q |
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| T |
12084505 |
aaatttgggtacttaattaacctttctgcagtgaaatatttcaaccactgcctgcttcaatttctgtggtgaaaagaacaaaat-aaatattcatagtta |
12084603 |
T |
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| Q |
416 |
gtttctaacaatttttaataaaatcag |
442 |
Q |
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| T |
12084604 |
gtttctaacaatttttaataaaatcag |
12084630 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 9936813 - 9936865
Alignment:
| Q |
30 |
cgacatcgataataatttaa-aaaatagtataattcagtataatcatatgtgt |
81 |
Q |
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| T |
9936813 |
cgacatcgataataatttaagaaaatgatataattcaatataatcatatgtgt |
9936865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 18226955 - 18226996
Alignment:
| Q |
41 |
ataatttaaaaaatagtataattcagtataatcatatgtgtc |
82 |
Q |
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| T |
18226955 |
ataatttataaaatcatataattcagtataatcatatgtgtc |
18226996 |
T |
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