View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_12 (Length: 439)
Name: NF21107_low_12
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 162 - 380
Target Start/End: Original strand, 6188249 - 6188464
Alignment:
| Q |
162 |
atgtattgaccacgtatgtgttctttctttcattcttcctcattgtttgacaattgacaggaagtatacagtgcatattacggttaagttcacctgtaat |
261 |
Q |
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| T |
6188249 |
atgtattgaccacgtatgtgttctttctttcattcttcctcattgtttgacaattgacaggaagtatacagtgcatattacggttaagttcacctgtaat |
6188348 |
T |
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| Q |
262 |
tttattttataactcgtcatatttaacacaaatagagattaaccattatataatgaaggtgtaaagttattttacacgtacattcaatgatgtacttcaa |
361 |
Q |
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| T |
6188349 |
tttattttataactcgtcatatttaacacaaatagagattaatcattatataatgaaggtgtaaagttattttacacgtacattca---atgtacttcaa |
6188445 |
T |
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| Q |
362 |
ctctaactaattaatatta |
380 |
Q |
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| T |
6188446 |
ctctaactaattaatatta |
6188464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 6188053 - 6188197
Alignment:
| Q |
21 |
agcaattcatactgcttttggggnnnnnnnttaatttggcgtgtcgacaataagattctaaaattaattannnnnnnctttgttaaggaatgaaggaagt |
120 |
Q |
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| T |
6188053 |
agcaattcatactgcttttggggaaaaaaattaatttggcgtgtcgacaataagattctaaaattaattatttttttctttgttaaggaatgaaggaagt |
6188152 |
T |
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| Q |
121 |
tactaggaagtggtgggattactttaattaattaatttggtatgt |
165 |
Q |
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| T |
6188153 |
tactaggaagtggtgggattactttaattaattaatttggtatgt |
6188197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 439
Target Start/End: Complemental strand, 52431217 - 52431189
Alignment:
| Q |
411 |
aatttatactccctccgtccctaattata |
439 |
Q |
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| T |
52431217 |
aatttatactccctccgtccctaattata |
52431189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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