View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_13 (Length: 405)
Name: NF21107_low_13
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 1323950 - 1324324
Alignment:
| Q |
19 |
attaaatcacactaaatttaccaatcaacagataaattaattgttacaattttcttaaatnnnnnnn-gtactacgaatcacatatatataatgtataaa |
117 |
Q |
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| T |
1323950 |
attaaatcacactaaatttaccaatcaacagataaattaattgttacaattttcttaaatcaagaaaagtactacgaatcacatatatataatgtataaa |
1324049 |
T |
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| Q |
118 |
aatattgggatgttacatgtaatgtgagttaactcatgttggta-tcaaagcgagttaactcacgctggataccgaatgtgagttaattcatgttgagat |
216 |
Q |
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| T |
1324050 |
aatattgggatgttacatgtaatgtgagttaactcatgttggtaatcaaagcgagttaactcacgctggataccgaatgtgagttaatttatgttgagat |
1324149 |
T |
|
| Q |
217 |
tannnnnnnaaaatttaaggtgggaatgagcaaaatgaaaatagagaaaagcaaatttcgaaaatgaaatggccatatgcgacgagacttcattgagcca |
316 |
Q |
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| T |
1324150 |
tattttttgaaa-tttgaggtggaaatgagcaaaatgaaaatggagaaaagcaaatttcgagaatgaaatggccatatgcgacgagacttcattgagcca |
1324248 |
T |
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| Q |
317 |
agagatggtaaccatatgggccgcaatgcccctatctctcataacaaagtctatactagaattagggatacgacct |
392 |
Q |
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| T |
1324249 |
agagatggtaaccatatgggccgcaatgccactatctctcataacaaagtctagactagaattagggatacaacct |
1324324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 9992137 - 9992101
Alignment:
| Q |
98 |
acatatatataatgtataaaaatattgggatgttaca |
134 |
Q |
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| T |
9992137 |
acatatatataatgtataaaaatatcgggatgttaca |
9992101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 28008198 - 28008136
Alignment:
| Q |
141 |
gtgagttaactcatgttggtatcaaagcgagttaactcacgctggataccgaatgtgagttaa |
203 |
Q |
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| T |
28008198 |
gtgagttaactcacgctggtatcaatgcaagttaactcacgctaggtaccgagcgtgagttaa |
28008136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 29586520 - 29586483
Alignment:
| Q |
98 |
acatatatataatgtataaaaatattgggatgttacat |
135 |
Q |
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| T |
29586520 |
acatatatataatgtataaaaataccgggatgttacat |
29586483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 40842779 - 40842823
Alignment:
| Q |
90 |
tacgaatcacatatatataatgtataaaaatattgggatgttaca |
134 |
Q |
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| T |
40842779 |
tacgaatgacatatatatgatgtataaaaatattgggatgttaca |
40842823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 55160966 - 55160929
Alignment:
| Q |
98 |
acatatatataatgtataaaaatattgggatgttacat |
135 |
Q |
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| T |
55160966 |
acatatatataatatataaaaatatcgggatgttacat |
55160929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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