View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_15 (Length: 398)
Name: NF21107_low_15
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 33 - 382
Target Start/End: Complemental strand, 38850181 - 38849835
Alignment:
| Q |
33 |
tataaatcttgaatgtggcagtaatacaaattaacaagtaccactacttggatccgtatcatgatgttaatgtttttaatgatttggcaataacatattc |
132 |
Q |
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| T |
38850181 |
tataaatcttgaatgtggcagtaatacaaattaacaagtaccactacttggatccgtatcatgatgttaatgtttttaatgatttggcaataacatattc |
38850082 |
T |
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| Q |
133 |
gcacatagtgaattaataaccgcggaagacaagaatttttagtcatggttttatcattaaaagcgataccacttacttgcttgcatccatatcctgattt |
232 |
Q |
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| T |
38850081 |
gcaga--gtgaattaataaccgcggaagacaagaatttt-agtcatggttttatcattaaaagcgataccacttacttgcttgcatccatatcttgattt |
38849985 |
T |
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| Q |
233 |
gttggatatcactactgtcactgtttctttgtacctgcatcttgtgagagattgacactaacaagggttacttaatcaactttttagtgtgcgtaacttt |
332 |
Q |
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| T |
38849984 |
gttggatatcactactgtcactgtttctttgtacctgcatcttgtgagagattgacactaacaagggttacttaatcaactttttagtgtgcgtaacttt |
38849885 |
T |
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| Q |
333 |
agatattaatcaactgtttgtttctttgtacctgctgcatctttgcaaat |
382 |
Q |
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| T |
38849884 |
agattttaatcaactgtttgtttctttgtacctgctgcatctttgcaaat |
38849835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 38859901 - 38859968
Alignment:
| Q |
217 |
atccatatcctgatttgttggatatcactactgtcactgtttctttgtacctgcatcttgtgagagat |
284 |
Q |
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| T |
38859901 |
atccgtatcgtgatttgttggatatcactacttttatagtttctttgcacctgcatcctgtgagagat |
38859968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 38866092 - 38866143
Alignment:
| Q |
149 |
taaccgcggaagacaagaatt-tttagtcatggttttatcattaaaagcgat |
199 |
Q |
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| T |
38866092 |
taaccacggaagacaagaattatttagtcatggttttatcattaaaaacgat |
38866143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 38859874 - 38859914
Alignment:
| Q |
57 |
tacaaattaacaagtaccactacttggatccgtatcatgat |
97 |
Q |
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| T |
38859874 |
tacaaattaacaagtaccactactggtatccgtatcgtgat |
38859914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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