View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_16 (Length: 395)
Name: NF21107_low_16
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 179 - 386
Target Start/End: Original strand, 41574949 - 41575156
Alignment:
| Q |
179 |
aacctgtatgtaccggaattgattataataagggttgtattaaaactagattcaggaacggcatcaatcgctttctgcacgctgctaaagttagcacgac |
278 |
Q |
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| T |
41574949 |
aacctgtatgtaccagaattgattataataagggttgtattaaaactagattcaggaacggcatcaatcgctttctgcacgctgctaaagttagcacgac |
41575048 |
T |
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| Q |
279 |
catttaagtcgactgtgaaagtgatggtcgcattatagtctaaaattagttgtgaagcccgtttgacctcgtcgcatttttccttatgcctcatccaatg |
378 |
Q |
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| T |
41575049 |
catttaagtcgactgtgaaagtgatggtcgcattatagtctaaaattagttgtgaagcccgtttggcctcgtcacatttttccttatgcctcatccaatg |
41575148 |
T |
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| Q |
379 |
atgatgtc |
386 |
Q |
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|||||||| |
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| T |
41575149 |
atgatgtc |
41575156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 41574791 - 41574876
Alignment:
| Q |
21 |
ggtgtacctcggtatatacaattgaaaacactagttagtagttagttatgtgttttttgttaaatattgatggaattctattgaat |
106 |
Q |
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| T |
41574791 |
ggtgtacctcggtatatacaattgaaaacactagttagtagttagttatgtgttttttgttaaatattgatggaattctattgaat |
41574876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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