View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_18 (Length: 362)
Name: NF21107_low_18
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 50507189 - 50506857
Alignment:
| Q |
18 |
caaatagaatagttcaatattaaaaattggagatccaactcaaatattaaatacaaactcctaatnnnnnnnnnntgtattttttaaaagaaaatatcat |
117 |
Q |
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| T |
50507189 |
caaatagcatagttcaatattaaaaattggagatccaactcaaatattaaatacaaactcctaataaaaaaaa--tgtattttttaaaagaaaatatcat |
50507092 |
T |
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| Q |
118 |
ttatttaaaccgtaaataacataaacttaagactaggctaacaatagtcatctttataaactaagtaaaagtaagt---ttgtacggaagtaactaacta |
214 |
Q |
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| T |
50507091 |
ttatttaaaccgtaaataacataaacttaaggctaggctaacaatagtcatctttataaactaagtaaaagtaagtaatttgtacgggagtaactaacta |
50506992 |
T |
|
| Q |
215 |
atttttgttgagttccattaaccactatagttgttctgatgtgttaaaaattaggcgcttaataaagagaacagcaataactaaaaaataatgataattt |
314 |
Q |
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| T |
50506991 |
atttttgttgagttccattaaccactataattgttctgatgtgttaaaaattaggcgcttaataaagagaacagcaataactaaaaaataatgataattt |
50506892 |
T |
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| Q |
315 |
atttagtatgaaatagatatcaagtatattggtct |
349 |
Q |
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| T |
50506891 |
atttagtgtgaaatagatatcaagtatatcggtct |
50506857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 12704673 - 12704730
Alignment:
| Q |
171 |
ttataaactaagtaaaagtaagtttgtacggaagtaactaactaatttttgttgagtt |
228 |
Q |
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| T |
12704673 |
ttataaattaagtaaaagtaagtttgtatggtaggaactaactaacttgtgttgagtt |
12704730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 10784295 - 10784588
Alignment:
| Q |
18 |
caaatagaatagttcaatattaaaaattggagatccaactcaaatattaaatacaaactcctaatnnnnnnnnnntgtattttttaaaagaaaatatcat |
117 |
Q |
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||||||| |||| ||||||||||||||||||||||| ||||||||||| |||| |||||| || | ||||||||||| || |||||| |
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| T |
10784295 |
caaatagcatagctcaatattaaaaattggagatcccgctcaaatattatatacggactcctgatataaaaatgtatttttttttaaaaggaattatcat |
10784394 |
T |
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| Q |
118 |
ttatttaaaccgtaaataacataaacttaagactaggctaacaatagtcatctttataaactaagtaa--------aagtaagtttgtacggaagtaact |
209 |
Q |
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| T |
10784395 |
ttatttaaactgcaaataacataaaatcaaggttaggcttacaatagtcatctttataaactaagtaataagtaaaaagtaagtttgtatgggagtaact |
10784494 |
T |
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| Q |
210 |
aactaatttttgttgagttccattaaccactatagttgttctgatgtgttaaaaattaggcgcttaataaagag-aacagcaataactaaaaaa |
302 |
Q |
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| T |
10784495 |
aactagtttttgttgagcttcattaaccactataattgttctgatgtgttaaaaattgggtgcttaataaagagaaacaccaataactaaaaaa |
10784588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 10786016 - 10786069
Alignment:
| Q |
295 |
ctaaaaaataatgataatttatttagtatgaaatagatatcaagtatattggtc |
348 |
Q |
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| T |
10786016 |
ctaaaaaataatgataaattatttagtgtgaaatagatatcaagtatattggtc |
10786069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 765330 - 765393
Alignment:
| Q |
162 |
tagtcatctttataaactaagtaaaagtaagtttgtacggaagtaactaactaatttttgttgag |
226 |
Q |
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| T |
765330 |
tagtcattcttataaattaagtaaaagtaagtttgta-gtaagaaactaactaaattgtgttgag |
765393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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