View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21107_low_2 (Length: 824)
Name: NF21107_low_2
Description: NF21107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21107_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 289 - 617
Target Start/End: Original strand, 43610861 - 43611190
Alignment:
| Q |
289 |
aacttaagaagtactataaagttagccgaaaatggctactatatttagagaannnnnnnattcattgacttgttaaccattcctatttagagatagatgg |
388 |
Q |
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| T |
43610861 |
aacttaagaagtactataaagttagccgaaaatggctactatatttagagagtttttttattcattgacttgttaaccattcctatttagagatagatgg |
43610960 |
T |
|
| Q |
389 |
agtgatttttctttcaacataccgaatctatttaagctaaatcttactcgaggctgcctaattccattttccacggttatctactatcta-ccataaatt |
487 |
Q |
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| T |
43610961 |
agtgatttttctttcaacataccgaatctatttaagctaaatcttactcgaggctgcctaattccattttccacggttatctactatctacccataaatt |
43611060 |
T |
|
| Q |
488 |
tgtgttggtttgaaggccatttacatagggctgaaattgtgataaaatggagaggcttctgtttatgcatatacggatagattagcataatagcgttacg |
587 |
Q |
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| T |
43611061 |
tgtgttggtttgaaggccatttacataggactgaaattgtgataaaatggagaggcttctgtttatgcatatacggatagattagcataatagcgttacg |
43611160 |
T |
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| Q |
588 |
ttactagttactaccttttactgcagacac |
617 |
Q |
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| T |
43611161 |
ttactagttactaccttttactgcacacac |
43611190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 87 - 294
Target Start/End: Complemental strand, 43610696 - 43610489
Alignment:
| Q |
87 |
taggacttcttcttttaaccttgctactgttcgagaaggttgagtttttctttaggtgttggatgggaagttctcgagctcatgatctgaagtagatcaa |
186 |
Q |
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| T |
43610696 |
taggacttcttcttttaaccttgctactgttcgagaaggtcgagtttttctttaggtgttggatgggaagttctcgagctcatgatctgaagtagatcaa |
43610597 |
T |
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| Q |
187 |
tatcgatgatcagagttgatgcagtgcacggcgtaggacgatagttaagctgagctcatcggtgtgagtaggacaatgattggagagagtggaacgtgca |
286 |
Q |
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| T |
43610596 |
tatcgatgatcagagttgatgcggtgcacggcgtaggacgacagttaagctgagctcatcggtgtgagtaggacaacgattggagagagtggaatgtgca |
43610497 |
T |
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| Q |
287 |
ataactta |
294 |
Q |
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|| ||||| |
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| T |
43610496 |
atcactta |
43610489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 661 - 810
Target Start/End: Original strand, 43611234 - 43611383
Alignment:
| Q |
661 |
aaatacattgtcaataacaaatttccattttcacttctgtatggtagttaacctatctatcaactgcataaaatgttcatctgtatccaacatgctaatt |
760 |
Q |
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| T |
43611234 |
aaatacattgtcaataacaaatttccattttcacttctgtatagtagttaacctatatatcaactgcataaaatgttcatctgtatccaacatgctaatt |
43611333 |
T |
|
| Q |
761 |
cttacatattttgggctcgccccaaattgtttaccacttctagtcaaaat |
810 |
Q |
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| T |
43611334 |
cttacatattttgggctcgccccaaattgttcaccacttctagtcaaaat |
43611383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 43610876 - 43610804
Alignment:
| Q |
18 |
tagtacttcttaagttttgttgcactccaggtttgagggattgacttgctaatgaaggttttaaggatgtagg |
90 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
43610876 |
tagtacttcttaagttttgttgcaatccaggtttgagggattgacttgctgaggaaggttttaaggatgtagg |
43610804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 697 - 801
Target Start/End: Original strand, 34685680 - 34685784
Alignment:
| Q |
697 |
ctgtatggtagttaacctatctatcaactgcataaaatgttcatctgtatccaacatgctaattcttacatattttgggctcgccccaaattgtttacca |
796 |
Q |
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||||||||||| ||| || |||| || || |||||| |||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||| ||| |
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| T |
34685680 |
ctgtatggtagataatctgtctagaaattgagtaaaattttcatcagtatccaacaagctaattcttacatattttgggctaaccccaaagtgttttcca |
34685779 |
T |
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| Q |
797 |
cttct |
801 |
Q |
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||||| |
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| T |
34685780 |
cttct |
34685784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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